Gene detail

Detail information of GWHGAAZE006284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAR37423.1	1.42283E-79	putative ethylene response factor 5 [Vitis aestivalis]
Swissprot	tr\|Q40478\|ERF5_TOBAC	8E-57	Ethylene-responsive transcription factor 5
trEMBL	tr\|Q6RZW7\|Q6RZW7_VITAE	5E-80	Putative ethylene response factor 5 {ECO:0000313\|EMBL:AAR37423.1}
TAIR10	AT5G47230.1	9E-39	ethylene responsive element binding factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22573344	22574246	-
GWHAAZE00000002	mRNA	22573344	22574246	-
GWHAAZE00000002	exon	22573344	22574246	-
GWHAAZE00000002	CDS	22573344	22574246	-

Transcript Sequence
>GWHTAAZE006292 ATGGCTACGCAAGAAGAAATCTCAGCCATACAACTCATCAGGCAACATCTCCTCGATGAATTCTCTACCGCTGATACCTTTCAACCTGCCATTTCCACTTCTCAATCTGATTCTTCGATTTGCACACGAACAGATAGTTGTGGACCTCAAATTACAAATTATCTCGACTCGATCCAAAACATCTTCAATTTTTCAACTGATTCAGTTAATTTCGAATTTGATCAAACTAGCTCCTTCGAATTCGAATTCGAATTCGAATCGAAACCTCAATTAATCAATCTCACGCTCGATTCAAACTCTCCGTCGAGTTCTAAATCTTACCTCAGAGATCGACGGCCATCTTTGAAGCTGGATTTACCTCCTGTGAGGAAATTCGAGTTGTTAGAATTCGGCGAGTCGACTAAGCCCCCGGCAGTAAAAGTTTCCGCACGGAAAGCTATAAACAATGAGGAGAAGAAGCATTACAGAGGGGTGCGACGGAGGCCGTGGGGCAGGTATGCGGCCGAGATCCGAGATCCTAAACGACGAGGGTCTAGGGTTTGGCTAGGTACATACAACACCGCCATTGAGGCCGCTAGGGCTTACGACAAGGCTGCGTTTCAAATGCGCGGAAGTAAAGCTATTCTTAACTTTCCTCTCGAGGTGGCAAATTTCAGTGGAAAATGCATCCCCGCAGATGGCAGCCGGAAAAGAGGAAGGGTAGTTGAAGATGAAGTTCCAGTGAAGAAGGAGAGGTCGGAATTTGAGACTTTGATTAATAATCAGATAAGTACTCCAGTGTCGACGCCGTCTTGTTGGGCGACAGATGTGGATCAAAATGTGAACGATTTGCTTGACTTTCCGCCGTTATCACCGTTATCTCCACATCCGGGCGTGAGGTACTCTCAGCTTATAGTGATGTGA

Network for GWHGAAZE006284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	154	204	3.90E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.583
	SRR3591706	second leaf	0.486
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.010
	SRR3591709	Stem	3.496
	SRR3591710	White floral bud	0.831
	SRR3591711	White flower	1.138
	SRR3591712	Green floral bud	0.825
	SRR3591713	Yellow flower	0.711
SRP173429	SRR8316895	Juvenile bud stage	2.364
	SRR8316896	Juvenile bud stage	1.437
	SRR8316897	Juvenile bud stage	2.094
	SRR8316894	Third green stage	0.800
	SRR8316900	Third green stage	1.017
	SRR8316901	Third green stage	0.658
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.030
	SRR8316903	Complete white stage	0.195
	SRR8316902	Silver flowering stage	1.249
	SRR8316904	Silver flowering stage	1.211
	SRR8316905	Silver flowering stage	0.216
	SRR8316906	Gold flowering stage	3.193
	SRR8316907	Gold flowering stage	1.678
	SRR8316908	Gold flowering stage	5.345
SRP132670	SRR6706286	Control	0.307
	SRR6706287	Light intensity 50%	0.542
	SRR6706288	Light intensity 20%	0.312
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.090
	CNS0095593	Slightly white alabastrum(diploid) 2	4.665
	CNS0095594	Slightly white alabastrum(diploid) 3	4.232
	CNS0095595	Whole white alabastrum(diploid) 2	2.215
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.374
	CNS0095598	Silvery flower (diploied) 1	6.866
	CNS0095599	Silvery flower (diploied) 2	7.598
	CNS0095600	Silvery flower (diploied) 3	3.089
	CNS0095601	Golden flower (diploid) 1	10.776
	CNS0095602	Golden flower (diploid) 2	2.641
	CNS0095603	Golden flower (diploid) 3	4.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.320
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.442
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.015
	CNS0095610	Silvery flower (diploied) 1	0.205
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.566
	CNS0095613	Golden flower (tetraploid) 1	0.814
	CNS0095614	Golden flower (tetraploid) 2	0.298
	CNS0095615	Golden flower (tetraploid) 3	0.186
CRA001975	CRR073297	Stem 1	0.791
	CRR073298	Stem 2	1.708
	CRR073299	Stem 3	0.981
	CRR073300	Leaf 1	1.178
	CRR073301	Leaf 2	1.087
	CRR073302	Leaf 3	1.053
	CRR073303	Juvenile bud 1	0.847
	CRR073304	Juvenile bud 2	1.232
	CRR073305	Juvenile bud 3	1.505
	CRR073306	Third green 1	0.054
	CRR073307	Third green 2	0.062
	CRR073308	Third green 3	0.068
	CRR073309	Second white 1	0.115
	CRR073310	Second white 2	0.726
	CRR073311	Second white 3	2.020
	CRR073312	Silver flowering 1	0.808
	CRR073313	Silver flowering 2	0.238
	CRR073314	Silver flowering 3	0.582
	CRR073315	Gold flowering 1	0.674
	CRR073316	Gold flowering 2	0.118
	CRR073317	Gold flowering 3	1.544
	CRR073318	Tawny withering 1	1.285
	CRR073319	Tawny withering 2	1.538
	CRR073320	Tawny withering 3	3.019