Detail information of GWHGAAZE006313


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009607206.10PREDICTED: cellulose synthase-like protein D3 [Nicotiana tomentosiformis]
Swissprottr|Q9M9M4|CSLD3_ARATH0Cellulose synthase-like protein D3
trEMBLtr|M0ZQX5|M0ZQX5_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400006160}
TAIR10AT3G03050.10cellulose synthase-like D3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2301314623017579-
GWHAAZE00000002mRNA2301314623017579-
GWHAAZE00000002exon2301314623014879-
GWHAAZE00000002exon2301513623015946-
GWHAAZE00000002exon2301678023017579-
GWHAAZE00000002CDS2301678023017579-
GWHAAZE00000002CDS2301513623015946-
GWHAAZE00000002CDS2301314623014879-
Transcript Sequence

Network for GWHGAAZE006313

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0285GO:0030244 cellulose biosynthetic process GOslim:biological_process
Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1
GO:0016760 cellulose synthase (UDP-forming) activity GOslim:molecular_function
GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14570.7zf-RING_4991481.60E-13
PF03552.15Cellulose_synt3517215.30E-182
PF03552.15Cellulose_synt72711021.40E-194
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0030244biological_processcellulose biosynthetic process
GO:0016020cellular_componentmembrane
GO:0016760molecular_functioncellulose synthase (UDP-forming) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.418
SRR3591706second leaf2.152
SRR3591707mature leaf1.665
SRR3591708Shoot apex6.295
SRR3591709Stem23.879
SRR3591710White floral bud4.597
SRR3591711White flower7.284
SRR3591712Green floral bud4.305
SRR3591713Yellow flower6.419
SRP173429 SRR8316895Juvenile bud stage 59.419
SRR8316896Juvenile bud stage 57.240
SRR8316897Juvenile bud stage 47.396
SRR8316894Third green stage 4.692
SRR8316900Third green stage 7.587
SRR8316901Third green stage 20.494
SRR8316898Complete white stage 0.494
SRR8316899Complete white stage 16.945
SRR8316903Complete white stage 1.052
SRR8316902Silver flowering stage3.775
SRR8316904Silver flowering stage2.518
SRR8316905Silver flowering stage0.825
SRR8316906Gold flowering stage 6.146
SRR8316907Gold flowering stage 11.319
SRR8316908Gold flowering stage 3.896
SRP132670SRR6706286Control2.898
SRR6706287Light intensity 50%2.795
SRR6706288Light intensity 20%3.052
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.258
CNS0095593Slightly white alabastrum(diploid) 222.949
CNS0095594Slightly white alabastrum(diploid) 320.094
CNS0095595Whole white alabastrum(diploid) 222.940
CNS0095596Whole white alabastrum(diploid) 33.060
CNS0095597Whole white alabastrum(diploid) 411.910
CNS0095598Silvery flower (diploied) 160.716
CNS0095599Silvery flower (diploied) 267.798
CNS0095600Silvery flower (diploied) 331.719
CNS0095601Golden flower (diploid) 135.852
CNS0095602Golden flower (diploid) 264.355
CNS0095603Golden flower (diploid) 359.730
CNS0095604Slightly white alabastrum(tetraploid) 12.273
CNS0095605Slightly white alabastrum(tetraploid) 21.967
CNS0095606Slightly white alabastrum(tetraploid) 34.543
CNS0095607Whole white alabastrum(tetraploid) 11.492
CNS0095608Whole white alabastrum(tetraploid) 21.240
CNS0095609Whole white alabastrum(tetraploid) 33.762
CNS0095610Silvery flower (diploied) 111.024
CNS0095611Silvery flower (diploied) 27.721
CNS0095612Silvery flower (diploied) 38.850
CNS0095613Golden flower (tetraploid) 15.375
CNS0095614Golden flower (tetraploid) 211.087
CNS0095615Golden flower (tetraploid) 34.279
CRA001975CRR073297Stem 117.089
CRR073298Stem 219.587
CRR073299Stem 319.877
CRR073300Leaf 117.042
CRR073301Leaf 245.544
CRR073302Leaf 38.192
CRR073303Juvenile bud 110.881
CRR073304Juvenile bud 214.455
CRR073305Juvenile bud 330.313
CRR073306Third green 111.881
CRR073307Third green 26.279
CRR073308Third green 38.610
CRR073309Second white 19.295
CRR073310Second white 29.987
CRR073311Second white 310.336
CRR073312Silver flowering 122.278
CRR073313Silver flowering 220.897
CRR073314Silver flowering 319.563
CRR073315Gold flowering 16.319
CRR073316Gold flowering 215.831
CRR073317Gold flowering 38.971
CRR073318Tawny withering 114.665
CRR073319Tawny withering 234.622
CRR073320Tawny withering 316.249