Gene detail

Detail information of GWHGAAZE006409

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU17859.1	0	hypothetical protein MIMGU_mgv1a008283mg [Erythranthe guttata]
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	2E-160	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|A0A022PQV9\|A0A022PQV9_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU17859.1}
TAIR10	AT5G47070.1	2E-124	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25228073	25232865	-
GWHAAZE00000002	mRNA	25228073	25232865	-
GWHAAZE00000002	exon	25228073	25228444	-
GWHAAZE00000002	exon	25229328	25229450	-
GWHAAZE00000002	exon	25230624	25230890	-
GWHAAZE00000002	exon	25232509	25232865	-
GWHAAZE00000002	CDS	25232509	25232865	-
GWHAAZE00000002	CDS	25230624	25230890	-
GWHAAZE00000002	CDS	25229328	25229450	-
GWHAAZE00000002	CDS	25228073	25228444	-

Transcript Sequence
>GWHTAAZE006417 ATGAAGTGCTTCAAATTCTTTAAACCCAAACACGATTCCCGGAGAGGAAAATCCGCCCCAGAATTGAGTGACAGAAGGAAATCATCAGAATCAGATAAAGGAAAGACGACTAGGACCACAAAGTCCACTGGTTCACTGCCGTCAAAAAGCATACCGGAGATGTACAGAGAGAAGGAGCACAATTTGAGGGTTTTCTCTTTTACGGAATTAAGAATGGCCACTAATAATTTCGACAGGTTATTCAAGATTGGTGAAGGTGGTTTTGGGAGTGTGTATAAGGGCACAATTAGGGATCCTAATGGGCAAGGAGAACCTCTTTTGGTTGCCATTAAGAAGCTCAACAAACATGGATTGCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTTGGCATTGTTGATCACCCTAACCTTGTAAAGCTTTTAGGATACTGCTCCGTAGATGGAGAGAGAGGGATCCAACGGCTATTAGTGTACGAGTACATGCCCAATAAGAGCTTAGAGGATCATCTTTTTGGAAGGGTTTCGCAACAGCATCCCCTTCCTTGGAAATTGAGATTACAGATTATCCATGGCGCCGCACAAGGATTAACTTATCTGCACGAGGGATTGGAAGTCCAGGTGATATATCGCGACTTCAAAACTTCAAATGTCCTATTGGATGCGGACTTGAAGCCAAAGCTCTCGGATTTTGGACTTGCTCGAGAAGGACCAATAGGAGACCGTACACACGTATCAACAGCGCCCGTTGGGACGTACGGGTACGCTGCACCGGAATACGTCGAAACTGGCCACCTCTCAACGAAGTGCGACATGTGGGGTTTCGGGGTGGTGCTGTACGAGATCCTCACAGGGAGGCGGGCACTGGATAGAAACCGCCCAACTATGGAGCAGAAGCTTCTAGATTGGGTGAAACAATACCCGGCTGATAGCAAGAAGTTCAGCATGATCATTGACCCGAGACTTAAAAACCACTATTCTATTAGTGCAGCTCGAAAAATCGCAAAGTTGGCCGATATTTGCCTGAACAAGAACCCGAAAGACCGACCGACAATGAGTGAGGTGGTGGAGATATTAGAGCAAATAATACAAGAGTCTGAAGGAATGCCCATGTAA

Network for GWHGAAZE006409

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	80	358	2.20E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.288
	SRR3591706	second leaf	14.871
	SRR3591707	mature leaf	13.743
	SRR3591708	Shoot apex	30.629
	SRR3591709	Stem	36.543
	SRR3591710	White floral bud	22.619
	SRR3591711	White flower	42.976
	SRR3591712	Green floral bud	10.037
	SRR3591713	Yellow flower	47.630
SRP173429	SRR8316895	Juvenile bud stage	15.864
	SRR8316896	Juvenile bud stage	18.536
	SRR8316897	Juvenile bud stage	21.568
	SRR8316894	Third green stage	2.774
	SRR8316900	Third green stage	5.163
	SRR8316901	Third green stage	12.391
	SRR8316898	Complete white stage	4.042
	SRR8316899	Complete white stage	19.840
	SRR8316903	Complete white stage	8.350
	SRR8316902	Silver flowering stage	10.044
	SRR8316904	Silver flowering stage	11.552
	SRR8316905	Silver flowering stage	6.705
	SRR8316906	Gold flowering stage	25.208
	SRR8316907	Gold flowering stage	24.328
	SRR8316908	Gold flowering stage	33.816
SRP132670	SRR6706286	Control	5.137
	SRR6706287	Light intensity 50%	6.161
	SRR6706288	Light intensity 20%	5.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.761
	CNS0095593	Slightly white alabastrum(diploid) 2	15.034
	CNS0095594	Slightly white alabastrum(diploid) 3	13.338
	CNS0095595	Whole white alabastrum(diploid) 2	11.877
	CNS0095596	Whole white alabastrum(diploid) 3	4.649
	CNS0095597	Whole white alabastrum(diploid) 4	8.144
	CNS0095598	Silvery flower (diploied) 1	25.041
	CNS0095599	Silvery flower (diploied) 2	34.311
	CNS0095600	Silvery flower (diploied) 3	25.582
	CNS0095601	Golden flower (diploid) 1	49.360
	CNS0095602	Golden flower (diploid) 2	44.954
	CNS0095603	Golden flower (diploid) 3	39.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.726
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.450
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.315
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.674
	CNS0095610	Silvery flower (diploied) 1	15.134
	CNS0095611	Silvery flower (diploied) 2	13.254
	CNS0095612	Silvery flower (diploied) 3	17.945
	CNS0095613	Golden flower (tetraploid) 1	15.401
	CNS0095614	Golden flower (tetraploid) 2	15.388
	CNS0095615	Golden flower (tetraploid) 3	37.458
CRA001975	CRR073297	Stem 1	11.460
	CRR073298	Stem 2	8.219
	CRR073299	Stem 3	8.471
	CRR073300	Leaf 1	8.018
	CRR073301	Leaf 2	13.766
	CRR073302	Leaf 3	7.081
	CRR073303	Juvenile bud 1	8.530
	CRR073304	Juvenile bud 2	6.812
	CRR073305	Juvenile bud 3	10.496
	CRR073306	Third green 1	7.058
	CRR073307	Third green 2	9.215
	CRR073308	Third green 3	9.625
	CRR073309	Second white 1	8.211
	CRR073310	Second white 2	8.440
	CRR073311	Second white 3	7.031
	CRR073312	Silver flowering 1	14.463
	CRR073313	Silver flowering 2	16.822
	CRR073314	Silver flowering 3	14.025
	CRR073315	Gold flowering 1	21.916
	CRR073316	Gold flowering 2	37.367
	CRR073317	Gold flowering 3	15.017
	CRR073318	Tawny withering 1	22.234
	CRR073319	Tawny withering 2	29.267
	CRR073320	Tawny withering 3	25.422