Gene detail

Detail information of GWHGAAZE006412

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008373630.1	3.2599E-132	PREDICTED: casein kinase II subunit beta-like isoform X2 [Malus domestica]
Swissprot	tr\|P40229\|CSK2C_ARATH	7E-127	Casein kinase II subunit beta'
trEMBL	tr\|A0A061G418\|A0A061G418_THECC	3E-132	Casein kinase II beta chain 1 isoform 2 {ECO:0000313\|EMBL:EOY24143.1}
TAIR10	AT4G17640.1	3E-93	casein kinase II beta chain 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25292374	25296787	-
GWHAAZE00000002	mRNA	25292374	25296787	-
GWHAAZE00000002	exon	25292374	25292511	-
GWHAAZE00000002	exon	25292626	25292653	-
GWHAAZE00000002	exon	25293791	25293981	-
GWHAAZE00000002	exon	25294070	25294215	-
GWHAAZE00000002	exon	25296508	25296787	-
GWHAAZE00000002	CDS	25296508	25296787	-
GWHAAZE00000002	CDS	25294070	25294215	-
GWHAAZE00000002	CDS	25293791	25293981	-
GWHAAZE00000002	CDS	25292626	25292653	-
GWHAAZE00000002	CDS	25292374	25292511	-

Transcript Sequence
>GWHTAAZE006420 ATGCTGACATTGTTTCCATCTGCATGTACAGCAGAGGAGTCTGAAACCGACAGTGAGGAGTCAGATGCTAGCGGTTCTGATGAGGATGATACATCTTGGATCTCATGGTTTTGCAATCTTCGTGGGAACGAGTTCTTTTGTGAAGTTGATGATGATTACATCCAAGATGATTTTAACCTTTGTGGGTTAAGCAGCCAAGTTCCTTATTATGATTATGCTCTTGATTTGATTTTGGATGTTGAATCCTCTCATGGTAAACTTACTTTTTCTAGAATCACTTGTGCAATACCTAAATTATATCAGCTTGAATGTGTAGGTGATATGTTTACAGAGGAACAAAATGAATTGGTTGAATCAGCAGCAGAGATGCTCTATGGTCTAATTCATGTCCGGTACATATTAACAACTAAAGGAATGGCTGCCATGTTGGAGAAATACAAAAACGCTGAGTTTGGTAGATGTCCAAGGGTTTATTGCTGTGGACAACCCTGCCTCCCTCTTGGCCAGTCAGATATTCCTCGTCAAAGCACTGTAAAAATCTACTGTCCCAAGTGTGAAGATATTTATACCCCTCGATCCAGGTTTCAAGATAGTATCCTTTATACCCATTTTTGCAGTTTCTGCCATTCTGGCTCAAATAAAAAGCTAATAGACCTTGATGGAGCCTATTTTGGGTCCACATTTCCTCACCTATTCCTTATGACTTATGGGCACCTCAAACCACAAAAGACATCACAGAGCTACGTTCCCAGAGTATTTGGTTTCAAGGTCCACAGGCCATGA

Network for GWHGAAZE006412

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01214.19	CK_II_beta	32	198	1.20E-60
PF01214.19	CK_II_beta	203	256	9.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03115	CSNK2B	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005956	cellular_component	protein kinase CK2 complex
GO:0019887	molecular_function	protein kinase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.898
	SRR3591706	second leaf	9.195
	SRR3591707	mature leaf	8.052
	SRR3591708	Shoot apex	12.877
	SRR3591709	Stem	15.197
	SRR3591710	White floral bud	16.125
	SRR3591711	White flower	9.000
	SRR3591712	Green floral bud	11.572
	SRR3591713	Yellow flower	7.016
SRP173429	SRR8316895	Juvenile bud stage	9.757
	SRR8316896	Juvenile bud stage	16.545
	SRR8316897	Juvenile bud stage	0.473
	SRR8316894	Third green stage	5.058
	SRR8316900	Third green stage	13.059
	SRR8316901	Third green stage	14.099
	SRR8316898	Complete white stage	8.675
	SRR8316899	Complete white stage	17.378
	SRR8316903	Complete white stage	13.884
	SRR8316902	Silver flowering stage	6.102
	SRR8316904	Silver flowering stage	9.238
	SRR8316905	Silver flowering stage	4.225
	SRR8316906	Gold flowering stage	12.411
	SRR8316907	Gold flowering stage	12.105
	SRR8316908	Gold flowering stage	3.508
SRP132670	SRR6706286	Control	8.779
	SRR6706287	Light intensity 50%	9.080
	SRR6706288	Light intensity 20%	8.508
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.450
	CNS0095593	Slightly white alabastrum(diploid) 2	9.409
	CNS0095594	Slightly white alabastrum(diploid) 3	11.039
	CNS0095595	Whole white alabastrum(diploid) 2	9.996
	CNS0095596	Whole white alabastrum(diploid) 3	11.868
	CNS0095597	Whole white alabastrum(diploid) 4	10.241
	CNS0095598	Silvery flower (diploied) 1	9.132
	CNS0095599	Silvery flower (diploied) 2	10.128
	CNS0095600	Silvery flower (diploied) 3	14.669
	CNS0095601	Golden flower (diploid) 1	9.174
	CNS0095602	Golden flower (diploid) 2	11.905
	CNS0095603	Golden flower (diploid) 3	10.356
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.951
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.720
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.576
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.527
	CNS0095610	Silvery flower (diploied) 1	2.125
	CNS0095611	Silvery flower (diploied) 2	1.814
	CNS0095612	Silvery flower (diploied) 3	0.886
	CNS0095613	Golden flower (tetraploid) 1	0.735
	CNS0095614	Golden flower (tetraploid) 2	1.389
	CNS0095615	Golden flower (tetraploid) 3	2.175
CRA001975	CRR073297	Stem 1	9.759
	CRR073298	Stem 2	8.786
	CRR073299	Stem 3	8.440
	CRR073300	Leaf 1	9.302
	CRR073301	Leaf 2	7.766
	CRR073302	Leaf 3	6.447
	CRR073303	Juvenile bud 1	6.299
	CRR073304	Juvenile bud 2	6.600
	CRR073305	Juvenile bud 3	6.642
	CRR073306	Third green 1	8.012
	CRR073307	Third green 2	10.659
	CRR073308	Third green 3	9.909
	CRR073309	Second white 1	5.027
	CRR073310	Second white 2	4.000
	CRR073311	Second white 3	5.176
	CRR073312	Silver flowering 1	4.723
	CRR073313	Silver flowering 2	2.942
	CRR073314	Silver flowering 3	5.244
	CRR073315	Gold flowering 1	4.706
	CRR073316	Gold flowering 2	4.571
	CRR073317	Gold flowering 3	1.640
	CRR073318	Tawny withering 1	11.813
	CRR073319	Tawny withering 2	8.351
	CRR073320	Tawny withering 3	10.003