Gene detail

Detail information of GWHGAAZE006457

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010646250.1	0	PREDICTED: transcriptional adapter ADA2b isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9ATB4\|TAD2B_ARATH	0	Transcriptional adapter ADA2b
trEMBL	tr\|F6HCV6\|F6HCV6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50051.1}
TAIR10	AT4G16420.2	8E-151	homolog of yeast ADA2 2B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25848105	25852043	-
GWHAAZE00000002	mRNA	25848105	25852043	-
GWHAAZE00000002	exon	25848105	25848296	-
GWHAAZE00000002	exon	25848390	25848614	-
GWHAAZE00000002	exon	25848799	25849009	-
GWHAAZE00000002	exon	25849261	25849471	-
GWHAAZE00000002	exon	25849592	25849710	-
GWHAAZE00000002	exon	25849800	25849863	-
GWHAAZE00000002	exon	25850504	25850579	-
GWHAAZE00000002	exon	25850673	25850798	-
GWHAAZE00000002	exon	25850952	25851017	-
GWHAAZE00000002	exon	25851607	25851779	-
GWHAAZE00000002	exon	25851989	25852043	-
GWHAAZE00000002	CDS	25851989	25852043	-
GWHAAZE00000002	CDS	25851607	25851779	-
GWHAAZE00000002	CDS	25850952	25851017	-
GWHAAZE00000002	CDS	25850673	25850798	-
GWHAAZE00000002	CDS	25850504	25850579	-
GWHAAZE00000002	CDS	25849800	25849863	-
GWHAAZE00000002	CDS	25849592	25849710	-
GWHAAZE00000002	CDS	25849261	25849471	-
GWHAAZE00000002	CDS	25848799	25849009	-
GWHAAZE00000002	CDS	25848390	25848614	-
GWHAAZE00000002	CDS	25848105	25848296	-

Transcript Sequence
>GWHTAAZE006465 TCAAGGAGAAAAAAGAATGCCTCAAGCGGAGAAAATTTAGACACTGCACCTGCAGGTCAAGGAACAAGTGACAAGGCTTTGTACCACTGCAACTATTGCAACAAAGACATTAGTGGGAAAATTCGTATAAAGTGTGCTGTTTGTTCTGATTTCGATCTATGCATAGAGTGTTTTTCAGTTGGTGCTGAAGTCAAGCCTCATAAAAGCAATCACCTTTACAGGGTTATGGACAATTTATCTTTCCCTCTTATCTGTCCCGACTGGAATGCTGACGAGGAAATGTTGCTTTTGGAGGCAATGGAAATGTATGGCATGGGGAACTGGACAGAAATTGGAGATCATGTAGGGACAAAGAGTAAAGAAGTATGCATTGCACATTATACGACTGCATACATGAACTCCCCGTACTTCCCTCTCCCGGACATGACTCATGTTGTGGGCAAAAATAGAAAGGACCTCCTAGCTATGGCCAAAGGGCATGGCGACGATAAGAAAGGACTTTCTTCACTCGGGGATCTCAAGCTAAAGGATGAATCTCTATTTTCCCTTTCAAGAGTCAAAATTGAAGATTCGCATAAAGGTGGTCCTTCAGGTCGTTTACTGTCTGGAACAACTGCCGTGAAGAAGGCATCCAACATTGTCCAGGTCAAGGATGGTCCTGATTCTATAAAACTCGAAGGCAGGAGTTTTGGGGGTAACAAACCTAAATCTTCGAGGGACGAGGGACCTTCTTTGATGGACATAAGTGGTTATAACCCCAAAAGACAGGAATTTGATCCTGAATATGATAATGATGCTGAGCAGTTACTGGCTGATATGGAATTCAAGGAGGCTGATACTGAGGAGGAGCGTGATCTAAAGTTGCGAGTTCTGCGCATCTATTCAAAGAGGCTTGATGAGAGAAAACGTAGGAAGGATTTCATTCTAGAGAGAGATCTGCTCCATCAAAATCAGTTTGAGAAGGACTTGTGTGAAGAAGAGAAAAATATTTGTCGGCGTTATGACGTCTTCATGCGGTTTCATTCTAAGGAAGAACATGAAGAACTGCTTCATACTGTCATCTCAGAGCATCGGATTCTAAAAAGGATACAAGAACTTACGGAAGCAAGAGCTGCCGGTTGTCATTCATCAGCCGATGCTGATAAGTATTTAGAACAGAAAAGGAAGAGGGAAGGTGAAGAAAGTGGACGCAGAAAGGAAGGTAGTCAGGCAGGTGTAAATATGGACTCAATGGGCACATATTCAAATTTAAGAAACTCAGCAGAACAGGCTATCTCAAGCTCTCTTACGGATTTGGATATAAAGGCGGATTTATTATCTGAACCTGAGAAACGACTATGCCGAGAAATACGGATACCGCCGTTACAGTATCTTAAGATGCAAGAGGTTATGTCAGTACAGATCTTCAGTGGCAATGTTACTAAGAAATCCGATGCTTATTCTTTATTTAATATTGAACCGGCCAAAGTTGATAGAGTTTATGATATGCTTGCCAGAAAGGGGATTGCACAACCGTGA

Network for GWHGAAZE006457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00569.18	ZZ	27	68	7.80E-10
PF00249.32	Myb_DNA-binding	87	128	4.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006357	biological_process	regulation of transcription by RNA polymerase II
GO:0035065	biological_process	regulation of histone acetylation
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding
GO:0003677	molecular_function	DNA binding
GO:0003713	molecular_function	transcription coactivator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.555
	SRR3591706	second leaf	12.046
	SRR3591707	mature leaf	6.962
	SRR3591708	Shoot apex	17.445
	SRR3591709	Stem	17.803
	SRR3591710	White floral bud	14.374
	SRR3591711	White flower	13.007
	SRR3591712	Green floral bud	13.016
	SRR3591713	Yellow flower	11.085
SRP173429	SRR8316895	Juvenile bud stage	11.129
	SRR8316896	Juvenile bud stage	14.086
	SRR8316897	Juvenile bud stage	8.495
	SRR8316894	Third green stage	6.671
	SRR8316900	Third green stage	17.602
	SRR8316901	Third green stage	16.269
	SRR8316898	Complete white stage	8.302
	SRR8316899	Complete white stage	27.957
	SRR8316903	Complete white stage	10.325
	SRR8316902	Silver flowering stage	7.891
	SRR8316904	Silver flowering stage	11.558
	SRR8316905	Silver flowering stage	5.547
	SRR8316906	Gold flowering stage	21.511
	SRR8316907	Gold flowering stage	15.956
	SRR8316908	Gold flowering stage	17.114
SRP132670	SRR6706286	Control	11.054
	SRR6706287	Light intensity 50%	12.946
	SRR6706288	Light intensity 20%	11.642
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.366
	CNS0095593	Slightly white alabastrum(diploid) 2	12.642
	CNS0095594	Slightly white alabastrum(diploid) 3	10.880
	CNS0095595	Whole white alabastrum(diploid) 2	10.588
	CNS0095596	Whole white alabastrum(diploid) 3	10.500
	CNS0095597	Whole white alabastrum(diploid) 4	11.421
	CNS0095598	Silvery flower (diploied) 1	14.889
	CNS0095599	Silvery flower (diploied) 2	9.743
	CNS0095600	Silvery flower (diploied) 3	15.685
	CNS0095601	Golden flower (diploid) 1	9.063
	CNS0095602	Golden flower (diploid) 2	13.396
	CNS0095603	Golden flower (diploid) 3	13.327
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.266
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.387
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.065
	CNS0095610	Silvery flower (diploied) 1	18.183
	CNS0095611	Silvery flower (diploied) 2	15.123
	CNS0095612	Silvery flower (diploied) 3	12.062
	CNS0095613	Golden flower (tetraploid) 1	11.915
	CNS0095614	Golden flower (tetraploid) 2	14.713
	CNS0095615	Golden flower (tetraploid) 3	14.911
CRA001975	CRR073297	Stem 1	12.309
	CRR073298	Stem 2	10.910
	CRR073299	Stem 3	8.048
	CRR073300	Leaf 1	12.053
	CRR073301	Leaf 2	11.521
	CRR073302	Leaf 3	8.430
	CRR073303	Juvenile bud 1	6.957
	CRR073304	Juvenile bud 2	7.323
	CRR073305	Juvenile bud 3	6.399
	CRR073306	Third green 1	2.769
	CRR073307	Third green 2	3.902
	CRR073308	Third green 3	4.172
	CRR073309	Second white 1	4.714
	CRR073310	Second white 2	5.378
	CRR073311	Second white 3	4.580
	CRR073312	Silver flowering 1	2.546
	CRR073313	Silver flowering 2	3.270
	CRR073314	Silver flowering 3	3.170
	CRR073315	Gold flowering 1	7.140
	CRR073316	Gold flowering 2	8.274
	CRR073317	Gold flowering 3	2.695
	CRR073318	Tawny withering 1	7.556
	CRR073319	Tawny withering 2	8.571
	CRR073320	Tawny withering 3	5.553