Gene detail

Detail information of GWHGAAZE006481

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008799345.1	5.65483E-88	PREDICTED: phosphoribosylglycinamide formyltransferase, chloroplastic isoform X2 [Phoenix dactylifera]
Swissprot	tr\|P52423\|PUR3_VIGUN	1E-70	Phosphoribosylglycinamide formyltransferase, chloroplastic (Precursor)
trEMBL	tr\|D7TZ11\|D7TZ11_VITVI	1E-80	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35737.3}
TAIR10	AT1G31220.1	7E-33	Formyl transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26260589	26264196	-
GWHAAZE00000002	mRNA	26260589	26264196	-
GWHAAZE00000002	exon	26264176	26264196	-
GWHAAZE00000002	exon	26263597	26264068	-
GWHAAZE00000002	exon	26262061	26262172	-
GWHAAZE00000002	exon	26261335	26261461	-
GWHAAZE00000002	exon	26260589	26260702	-
GWHAAZE00000002	CDS	26264176	26264196	-
GWHAAZE00000002	CDS	26263597	26264068	-
GWHAAZE00000002	CDS	26262061	26262172	-
GWHAAZE00000002	CDS	26261335	26261461	-
GWHAAZE00000002	CDS	26260589	26260702	-

Transcript Sequence
>GWHTAAZE006489 ATGCATCTGGTTTTTATTGAGTCACAGTTGGTCACCACCGTTCAGCGGCAAACTAATTTGCTAAATAATAAAAGAAGGAATTCAACTCTTTTTATCAAGCATTTGAATGGAAGCCCAAAGCTTAATTTTTGGGTTCTGTTCAATTCACCAATCACATCAATTCAAAACCCTAAAGTTCTGTCCTTTTCAACATTACCCTCTTCTTCCTTTTCTCCATCATCATCATGCAATCAATGTCCAAAAAGGATTTCATTCAAAACCCATCCTTCATTTGCTTCACGTATTGTAGCATCTAATATCTTGAAGTGTAGAAATAGTGTTGAAAAGGCGGAAAGTAGTACTGATTACGGTGAATATACAAGAACAGGGGTTAGAAATAAAAACTTAGCTGTTTTTGTTTCTGGTGGAGGATCGAATTTCCGGTCAATTCATGAAGCAACTCTTAGAGGATCAGTTCATGGAGACATTGTCGTTTTGGTGGCAAGCAAGCATGATTGTGGAGGTGCAGAGTATGCAAGAGATAATGGCATACCTGTCATTTTGTTCCCTAAAGTGAAAGGCAAACCTGAAGGTCTGTCTTCAAATGATCTTGTAACTGCTCTTAGATACTCGGGTCCTACAGTTCATTTCGTTGATGAGGAATATGACACGGGGCGTATCCTCGCTCAGAGGATTGTTCCTGTTCTTGCTAGTGACACTCCTGAAGAGTTGGCTGCCAGAGTTCTTCATGAGGAACATAAAATGTATGTGGAGGTAGTAGCAGCATCATGTGAAGATCGGATAATTTGGAGGGAGGATGGTGTCCCTCTCATCCGAAGCAAAGAAAACCCTAACAACTACCATTAG

Network for GWHGAAZE006481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00551.20	Formyl_trans_N	127	202	4.50E-11
PF00551.20	Formyl_trans_N	202	253	7.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00601	E2.1.2.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016742	molecular_function	hydroxymethyl-, formyl- and related transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.695
	SRR3591706	second leaf	9.048
	SRR3591707	mature leaf	9.383
	SRR3591708	Shoot apex	14.442
	SRR3591709	Stem	12.109
	SRR3591710	White floral bud	9.991
	SRR3591711	White flower	13.346
	SRR3591712	Green floral bud	15.749
	SRR3591713	Yellow flower	12.993
SRP173429	SRR8316895	Juvenile bud stage	8.206
	SRR8316896	Juvenile bud stage	8.143
	SRR8316897	Juvenile bud stage	5.752
	SRR8316894	Third green stage	6.894
	SRR8316900	Third green stage	15.477
	SRR8316901	Third green stage	13.475
	SRR8316898	Complete white stage	2.368
	SRR8316899	Complete white stage	12.986
	SRR8316903	Complete white stage	5.308
	SRR8316902	Silver flowering stage	3.082
	SRR8316904	Silver flowering stage	5.283
	SRR8316905	Silver flowering stage	2.410
	SRR8316906	Gold flowering stage	7.650
	SRR8316907	Gold flowering stage	7.753
	SRR8316908	Gold flowering stage	6.932
SRP132670	SRR6706286	Control	7.001
	SRR6706287	Light intensity 50%	7.081
	SRR6706288	Light intensity 20%	7.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.635
	CNS0095593	Slightly white alabastrum(diploid) 2	11.299
	CNS0095594	Slightly white alabastrum(diploid) 3	11.001
	CNS0095595	Whole white alabastrum(diploid) 2	8.753
	CNS0095596	Whole white alabastrum(diploid) 3	7.654
	CNS0095597	Whole white alabastrum(diploid) 4	8.042
	CNS0095598	Silvery flower (diploied) 1	9.151
	CNS0095599	Silvery flower (diploied) 2	5.671
	CNS0095600	Silvery flower (diploied) 3	6.452
	CNS0095601	Golden flower (diploid) 1	4.401
	CNS0095602	Golden flower (diploid) 2	5.552
	CNS0095603	Golden flower (diploid) 3	6.092
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.558
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.665
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.507
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.879
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.039
	CNS0095610	Silvery flower (diploied) 1	7.827
	CNS0095611	Silvery flower (diploied) 2	8.031
	CNS0095612	Silvery flower (diploied) 3	4.062
	CNS0095613	Golden flower (tetraploid) 1	5.242
	CNS0095614	Golden flower (tetraploid) 2	8.156
	CNS0095615	Golden flower (tetraploid) 3	4.666
CRA001975	CRR073297	Stem 1	4.950
	CRR073298	Stem 2	5.497
	CRR073299	Stem 3	3.729
	CRR073300	Leaf 1	8.747
	CRR073301	Leaf 2	6.193
	CRR073302	Leaf 3	6.048
	CRR073303	Juvenile bud 1	6.261
	CRR073304	Juvenile bud 2	5.363
	CRR073305	Juvenile bud 3	6.770
	CRR073306	Third green 1	0.438
	CRR073307	Third green 2	0.470
	CRR073308	Third green 3	0.810
	CRR073309	Second white 1	0.795
	CRR073310	Second white 2	0.995
	CRR073311	Second white 3	0.591
	CRR073312	Silver flowering 1	0.400
	CRR073313	Silver flowering 2	0.411
	CRR073314	Silver flowering 3	0.616
	CRR073315	Gold flowering 1	3.610
	CRR073316	Gold flowering 2	5.686
	CRR073317	Gold flowering 3	3.595
	CRR073318	Tawny withering 1	4.914
	CRR073319	Tawny withering 2	4.991
	CRR073320	Tawny withering 3	4.653