Gene detail

Detail information of GWHGAAZE006589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002317235.2	7.0317E-168	hypothetical protein POPTR_0011s04470g [Populus trichocarpa]
Swissprot	tr\|Q38945\|DPNPH_ARATH	5E-123	PAP-specific phosphatase HAL2-like
trEMBL	tr\|B9HYY6\|B9HYY6_POPTR	3E-168	Uncharacterized protein {ECO:0000313\|EMBL:EEE97847.2}
TAIR10	AT5G54390.1	4E-97	HAL2-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28279126	28281711	+
GWHAAZE00000002	mRNA	28279126	28281711	+
GWHAAZE00000002	exon	28279126	28279312	+
GWHAAZE00000002	exon	28280026	28280698	+
GWHAAZE00000002	exon	28281408	28281711	+
GWHAAZE00000002	CDS	28279126	28279312	+
GWHAAZE00000002	CDS	28280026	28280698	+
GWHAAZE00000002	CDS	28281408	28281711	+

Transcript Sequence
>GWHTAAZE006597 ATGGAGGGGCAGAACAAGATGCCACCTGAATCTTCAGAGCCAGACAAATACTCCAAAGAATTGGAAATTGCTGTGAGAACTGTACACATGGCTTGTTTGGTTTGTGAGAAAGTGCAAGAAAGTTTAGGCTCTCGAGTGAATGACCAAGCCCAATGCAAGGATGACTATTGTCCTGTCAGAATTGCTGCTTGTAGTGTCCAAGCAACTGTCAGCAGGGTACTTTCTGAGGCTTTTGGTATCCAAAATATTCCCATTGTTTCTCAAGAAGATAATAAAACACTCTCAAAAGCTAATTTAGAAGCTGTGGTGAAAACCGTTAACACATCTCTGGCTGAAGCGCCCCGTTTTGGATTTCCGGTTACTAAAAATCTTGAAACTAAAGAGGTTCTTGAGGCCATAACAAAAACCAGCTCGTTACCCCTAAATGGAAGATTTTGGGTTCTAAATCCCTTTGATAGTGCATCTGAATTTATACACGGTGGTCAGTACGCGGTAACTCTAGCATTGATAGAAGAGGGAGAAGTTGTTGTTGGAGTTCTTGCTTGTCCCAACTACACTTTGAAGAAAGAAATGCTAAGTTATCAGAATAACTATCGCGCTATTATATTTAAGTTGACGTCACAAAAAGTATTTGAGTCTTTGGGTAAAGGTTGTGTGATTTATACGAGTAGAGGAAGTGGAAATGTGTGGACTCAACCGTTAATAGGTGGTGAAAAGACACTTGTTTGGCCAAATTTTGCTACGAAAGTGCGAGCTTTTGTCGTTGATAATCTGGAATTGGCTACGTTCTGTGAACCGGTTGAGAAGGTGAATGCTAGTCACTCGTTCACAGCTGGACTAGCTCATAGCATGGGGCTTAGGAACCAACCATTACTCGTACACAATACATTGAAGTACATGGCCATAGCACGAGGGGAAGCTGATGTGTTCATGAAATTTGAACGTGCTGGCTACAAGGAAAAAATACGCGATCATGCAGCCGGTTCCATTATTATTCAAGAAGCCGGTGGTGTTGTTACTGATGCCAGAGGCCGTCCACTGGATTTTTCGAAAGGTGTGTATTTAGAACGAATTGATCGCGGAATAGTTGCTTGTGCTGGAGCCAAATTACACGCAAACATTATCACGGCTATTGATGACAGCTGGAGCTCCTCTTGTCTATGA

Network for GWHGAAZE006589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00459.26	Inositol_P	58	382	6.70E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01082	cysQ, MET22, BPNT1	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920

Gene Ontology

GO term	Ontology	Name
GO:0046854	biological_process	phosphatidylinositol phosphorylation
GO:0006790	biological_process	sulfur compound metabolic process
GO:0008441	molecular_function	3'(2'),5'-bisphosphate nucleotidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.051
	SRR3591706	second leaf	1.385
	SRR3591707	mature leaf	16.139
	SRR3591708	Shoot apex	0.487
	SRR3591709	Stem	2.587
	SRR3591710	White floral bud	3.778
	SRR3591711	White flower	2.162
	SRR3591712	Green floral bud	7.851
	SRR3591713	Yellow flower	2.587
SRP173429	SRR8316895	Juvenile bud stage	1.402
	SRR8316896	Juvenile bud stage	17.610
	SRR8316897	Juvenile bud stage	3.540
	SRR8316894	Third green stage	4.539
	SRR8316900	Third green stage	5.198
	SRR8316901	Third green stage	3.854
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	1.038
	SRR8316903	Complete white stage	0.405
	SRR8316902	Silver flowering stage	0.063
	SRR8316904	Silver flowering stage	0.059
	SRR8316905	Silver flowering stage	0.127
	SRR8316906	Gold flowering stage	0.402
	SRR8316907	Gold flowering stage	0.121
	SRR8316908	Gold flowering stage	0.474
SRP132670	SRR6706286	Control	6.634
	SRR6706287	Light intensity 50%	4.457
	SRR6706288	Light intensity 20%	3.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.346
	CNS0095593	Slightly white alabastrum(diploid) 2	1.855
	CNS0095594	Slightly white alabastrum(diploid) 3	12.990
	CNS0095595	Whole white alabastrum(diploid) 2	0.771
	CNS0095596	Whole white alabastrum(diploid) 3	1.395
	CNS0095597	Whole white alabastrum(diploid) 4	2.396
	CNS0095598	Silvery flower (diploied) 1	3.286
	CNS0095599	Silvery flower (diploied) 2	2.667
	CNS0095600	Silvery flower (diploied) 3	1.408
	CNS0095601	Golden flower (diploid) 1	4.782
	CNS0095602	Golden flower (diploid) 2	3.741
	CNS0095603	Golden flower (diploid) 3	3.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.689
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.325
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.848
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.507
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.027
	CNS0095610	Silvery flower (diploied) 1	4.744
	CNS0095611	Silvery flower (diploied) 2	3.650
	CNS0095612	Silvery flower (diploied) 3	0.538
	CNS0095613	Golden flower (tetraploid) 1	0.853
	CNS0095614	Golden flower (tetraploid) 2	3.462
	CNS0095615	Golden flower (tetraploid) 3	0.214
CRA001975	CRR073297	Stem 1	4.886
	CRR073298	Stem 2	10.437
	CRR073299	Stem 3	8.389
	CRR073300	Leaf 1	2.407
	CRR073301	Leaf 2	1.783
	CRR073302	Leaf 3	2.826
	CRR073303	Juvenile bud 1	0.423
	CRR073304	Juvenile bud 2	0.616
	CRR073305	Juvenile bud 3	0.633
	CRR073306	Third green 1	0.015
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.034
	CRR073309	Second white 1	0.117
	CRR073310	Second white 2	0.109
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.377
	CRR073314	Silver flowering 3	0.123
	CRR073315	Gold flowering 1	48.438
	CRR073316	Gold flowering 2	46.696
	CRR073317	Gold flowering 3	33.913
	CRR073318	Tawny withering 1	7.003
	CRR073319	Tawny withering 2	2.763
	CRR073320	Tawny withering 3	6.811