Detail information of GWHGAAZE006590


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU43399.12.9536E-158hypothetical protein MIMGU_mgv1a010567mg [Erythranthe guttata]
Swissprottr|Q9M5P2|SCAM3_ARATH2E-144Secretory carrier-associated membrane protein 3
trEMBLtr|A0A022RTL4|A0A022RTL4_ERYGU1E-158Uncharacterized protein {ECO:0000313|EMBL:EYU43399.1}
TAIR10AT1G61250.15E-99secretory carrier 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2828422128289677-
GWHAAZE00000002mRNA2828422128289677-
GWHAAZE00000002exon2828422128284307-
GWHAAZE00000002exon2828473428284782-
GWHAAZE00000002exon2828515828285225-
GWHAAZE00000002exon2828531528285360-
GWHAAZE00000002exon2828589128285984-
GWHAAZE00000002exon2828610628286168-
GWHAAZE00000002exon2828685328286975-
GWHAAZE00000002exon2828723028287263-
GWHAAZE00000002exon2828789128287953-
GWHAAZE00000002exon2828803228288142-
GWHAAZE00000002exon2828961828289677-
GWHAAZE00000002CDS2828961828289677-
GWHAAZE00000002CDS2828803228288142-
GWHAAZE00000002CDS2828789128287953-
GWHAAZE00000002CDS2828723028287263-
GWHAAZE00000002CDS2828685328286975-
GWHAAZE00000002CDS2828610628286168-
GWHAAZE00000002CDS2828589128285984-
GWHAAZE00000002CDS2828531528285360-
GWHAAZE00000002CDS2828515828285225-
GWHAAZE00000002CDS2828473428284782-
GWHAAZE00000002CDS2828422128284307-
Transcript Sequence

Network for GWHGAAZE006590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0290Protein Kinases RLK-Pelle_RLCK-IXb family Protein Kinases RLK-Pelle_RLCK-IXb
GO:0016567 protein ubiquitination GOslim:biological_process
GO:0015031 protein transport GOslim:biological_process
GO:0004842 ubiquitin-protein transferase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04144.14SCAMP962416.70E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.092
SRR3591706second leaf23.527
SRR3591707mature leaf20.195
SRR3591708Shoot apex38.248
SRR3591709Stem57.730
SRR3591710White floral bud46.380
SRR3591711White flower46.384
SRR3591712Green floral bud55.852
SRR3591713Yellow flower38.392
SRP173429 SRR8316895Juvenile bud stage 24.014
SRR8316896Juvenile bud stage 35.458
SRR8316897Juvenile bud stage 21.788
SRR8316894Third green stage 15.780
SRR8316900Third green stage 44.752
SRR8316901Third green stage 37.784
SRR8316898Complete white stage 17.130
SRR8316899Complete white stage 68.924
SRR8316903Complete white stage 29.433
SRR8316902Silver flowering stage15.130
SRR8316904Silver flowering stage22.472
SRR8316905Silver flowering stage10.732
SRR8316906Gold flowering stage 30.277
SRR8316907Gold flowering stage 27.971
SRR8316908Gold flowering stage 32.539
SRP132670SRR6706286Control45.080
SRR6706287Light intensity 50%46.742
SRR6706288Light intensity 20%52.181
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.986
CNS0095593Slightly white alabastrum(diploid) 231.234
CNS0095594Slightly white alabastrum(diploid) 328.019
CNS0095595Whole white alabastrum(diploid) 225.646
CNS0095596Whole white alabastrum(diploid) 324.037
CNS0095597Whole white alabastrum(diploid) 424.943
CNS0095598Silvery flower (diploied) 143.780
CNS0095599Silvery flower (diploied) 238.668
CNS0095600Silvery flower (diploied) 347.351
CNS0095601Golden flower (diploid) 133.949
CNS0095602Golden flower (diploid) 248.021
CNS0095603Golden flower (diploid) 348.287
CNS0095604Slightly white alabastrum(tetraploid) 133.304
CNS0095605Slightly white alabastrum(tetraploid) 226.398
CNS0095606Slightly white alabastrum(tetraploid) 357.589
CNS0095607Whole white alabastrum(tetraploid) 120.308
CNS0095608Whole white alabastrum(tetraploid) 218.927
CNS0095609Whole white alabastrum(tetraploid) 355.553
CNS0095610Silvery flower (diploied) 148.958
CNS0095611Silvery flower (diploied) 257.602
CNS0095612Silvery flower (diploied) 343.976
CNS0095613Golden flower (tetraploid) 128.847
CNS0095614Golden flower (tetraploid) 242.205
CNS0095615Golden flower (tetraploid) 330.672
CRA001975CRR073297Stem 137.305
CRR073298Stem 240.172
CRR073299Stem 349.861
CRR073300Leaf 142.608
CRR073301Leaf 245.904
CRR073302Leaf 347.923
CRR073303Juvenile bud 149.404
CRR073304Juvenile bud 244.035
CRR073305Juvenile bud 359.344
CRR073306Third green 113.548
CRR073307Third green 216.660
CRR073308Third green 316.278
CRR073309Second white 111.445
CRR073310Second white 216.030
CRR073311Second white 312.600
CRR073312Silver flowering 19.420
CRR073313Silver flowering 28.810
CRR073314Silver flowering 38.451
CRR073315Gold flowering 126.451
CRR073316Gold flowering 238.557
CRR073317Gold flowering 328.645
CRR073318Tawny withering 153.509
CRR073319Tawny withering 252.905
CRR073320Tawny withering 355.382