Gene detail

Detail information of GWHGAAZE006705

Functional Annotation

Database	Orthologs	Annotation
Nr	AHF22084.1	OSC2 [Artemisia annua]
Swissprot	tr\|Q08IT1\|DADIS_PANGI	Dammarenediol II synthase
trEMBL	tr\|A0A068UWI8\|A0A068UWI8_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_68 {ECO:0000313\|EMBL:CDP12624.1}
TAIR10	AT1G78960.1	lupeol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30518767	30522868	+
GWHAAZE00000002	mRNA	30518767	30522868	+
GWHAAZE00000002	exon	30518767	30518967	+
GWHAAZE00000002	exon	30519142	30519330	+
GWHAAZE00000002	exon	30519490	30519579	+
GWHAAZE00000002	exon	30519668	30519862	+
GWHAAZE00000002	exon	30519982	30520066	+
GWHAAZE00000002	exon	30520169	30520524	+
GWHAAZE00000002	exon	30520611	30520844	+
GWHAAZE00000002	exon	30520951	30521073	+
GWHAAZE00000002	exon	30521172	30521270	+
GWHAAZE00000002	exon	30521375	30521434	+
GWHAAZE00000002	exon	30521588	30521634	+
GWHAAZE00000002	exon	30521750	30521893	+
GWHAAZE00000002	exon	30521986	30522163	+
GWHAAZE00000002	exon	30522499	30522579	+
GWHAAZE00000002	exon	30522683	30522868	+
GWHAAZE00000002	CDS	30518767	30518967	+
GWHAAZE00000002	CDS	30519142	30519330	+
GWHAAZE00000002	CDS	30519490	30519579	+
GWHAAZE00000002	CDS	30519668	30519862	+
GWHAAZE00000002	CDS	30519982	30520066	+
GWHAAZE00000002	CDS	30520169	30520524	+
GWHAAZE00000002	CDS	30520611	30520844	+
GWHAAZE00000002	CDS	30520951	30521073	+
GWHAAZE00000002	CDS	30521172	30521270	+
GWHAAZE00000002	CDS	30521375	30521434	+
GWHAAZE00000002	CDS	30521588	30521634	+
GWHAAZE00000002	CDS	30521750	30521893	+
GWHAAZE00000002	CDS	30521986	30522163	+
GWHAAZE00000002	CDS	30522499	30522579	+
GWHAAZE00000002	CDS	30522683	30522868	+

Transcript Sequence
>GWHTAAZE006713 ATGTGGAAGCTCAAAATTGCTCAAGGACTTGGCCCATATTTGTATAGTACTAACAATTTTGTTGGTAGACAGATTTGGGAATTCGAGCCTGACGCAGGCACACCAGAAGATAGAGAACAAATCGAAAAAGCTCGGAATGACTATTGCAATAATCGCCGACAGGGAGTTCATCCTTGTGGTGATATGCTCATGAGAATGCAGCTTATTAAAGAAAGTGGAATCGATCTTCTGAGCATACCCCCTGTGAGATTAGAAGAAAATGAAGAAGTGAACTACGAAGCAGTTACGACGGCTGTTAAGAAAGCCCTTCGACTGAATCGTGCCATTCAAGCACACGATGGTCATTGGCCAGCTGAAAATGCAGGGCCTTTGTTTTTTACACCTCCACTGCTCATTGCCCTGTACATTAGTGGAGCAATCAATACTATTCTAACAAGAGAACACAAGAAGGAGATGATTCGTTACATTTACAATCATCAAAACGATGATGGGGGATGGGGATTCTATATTGAGGGACACAGCACCATGATTGGCTCGGCACTTAGCTACGTGGCTTTACGTTTGCTAGGAGAAGGACCCGATAGTGGTAATGGTGCTGTTGATAGAGGACGAAAGTGGATCCTAGATCATGGGGGTGCGACTGGAATACCCTCTTGGGGAAAGACTTATCTCTCGGTTCTTGGAGTATATGAGTGGGAAGGGTGCAACCCATTGCCCCCAGAGTTCTGGCTTTTCCCTTCTAGCATGCCTTATCATCCAGCAAAAATGTGGTGTTACTGCCGCACAACTTACATGCCAATGTCATATTTATATGGGAAGAAATTTCATGGACCAATCACGGATCTTGTTCTAGCTTTGAGGCAAGAAATTCATCCCATACCTTATGAGGAGATAAATTGGAATAAGCAGCGCCACAATTGCTGCAAAGATGATCTCTACTACCCTCATAGCCCCATACAAGATCTTCTTTGGGACAGCCTTCACTACTTAAGTGAGCCAATTATCAAACGTTGGCCTTTTAACAAGCTAAGAAAAAGAGCTCTACAAAAATCAGTCGAGTTAATGCGCTATGGAGCTAAAGAAAGTAGATACATTACTATAGGATGTGTAGAAAAGAGTTTACAAATGATGTGCTGGTGGGCAGAGAACCCGAATGGGGACGAGTTCAAACATCACCTTGCTAGAGTTCCCGACTACTTATGGCTGGCCGAGGATGGAATGAAAATGCAGAGTTTTGGTAGTCAAGTATGGGATTGTGCTCTTGCAACCCAAGCAATTCTTGCAAGTAATATGGTTGAGGAATATGGGGATTCTCTCAAAAAAGCTCACTTCTACATTAAAGAATCACAGGTCAAAGAAAATCCATCGGGCGATTTCACAAAAATGTGTCGTCAATTCACTAAAGGATCATGGACTTTCTCTGATCAGGATCAGGGGTGGGTTGTTTCAGATTGCACAGCTGAATCACTAAAGTGTCTACTAATGCTGTCGCAAATGCCATCGGAAATTGCTGGAGAAAAGGTTGATGTTGAGAGATTATACGAGGCAGTGAACATTCTTCTTTATTTACAAAGTCCTGAAAGTGGTGGTTTTGCTATTTGGGAGCCACCAGTTCCACAACCATACTTACAAATGTTGAATCCATCAGAGATTTTCGCCGACATTGTTGTTGAGAAAGAACATATTGAGTGCACAGCATCTATAATCCAAGCATTGCTAGCATTCAAGCGTTTGCATCCAGGGCATCGCGAGAAAGAAATAGAAATCTCCGTCAAAAAAGCTGTGCACTTCGTTGAAGAAAAACAATGGCACGATGGATCATGGTACGGCTACTGGGGAATTTGCTTCCTATACGGAACATTCTTTGTGCTATCAGGCTTAGCTGCGGCTGGAAAGACATATAATAACAGTGAATCAATTCGTAAAGCTGTTAATTTTTTCCTTTCAACTCAAAATGAAGAGGGTGGCTGGGGAGAAAGCATCCAATCTTGCCCAAGTGAGAAATTTACACCACTCGACGGAAATCGTACAAACTTGGTACAAACATCATGGGCTATGTTGGGTCTCATGTTTGGTGGACAGGCCGAGAGAGATCCAAGGCCTTTACATAAAGCAGCAAAGCTATTGATTAATGCACAAATGGATAATGGAGATTTCCCTCAACAAGAAATTACTGGAGTCTACATGAAGAATTGCATGCTGCATTATGCAGAATACAGAAACATTTTTCCACTTTGGGCACTAGGAGAATATCGAAAACGCATCTGA

Network for GWHGAAZE006705

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	101	355	2.80E-36
PF13243.7	SQHop_cyclase_C	414	753	3.70E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15813	LUP4	Biosynthesis of secondary metabolites	map01110
K15813	LUP4	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.083
	SRR3591711	White flower	0.017
	SRR3591712	Green floral bud	4.677
	SRR3591713	Yellow flower	0.018
SRP173429	SRR8316895	Juvenile bud stage	3.498
	SRR8316896	Juvenile bud stage	17.457
	SRR8316897	Juvenile bud stage	5.124
	SRR8316894	Third green stage	5.077
	SRR8316900	Third green stage	18.611
	SRR8316901	Third green stage	11.397
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.134
	SRR8316903	Complete white stage	0.054
	SRR8316902	Silver flowering stage	0.078
	SRR8316904	Silver flowering stage	0.073
	SRR8316905	Silver flowering stage	0.062
	SRR8316906	Gold flowering stage	0.178
	SRR8316907	Gold flowering stage	0.036
	SRR8316908	Gold flowering stage	0.393
SRP132670	SRR6706286	Control	10.580
	SRR6706287	Light intensity 50%	10.131
	SRR6706288	Light intensity 20%	10.231
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.529
	CNS0095593	Slightly white alabastrum(diploid) 2	1.192
	CNS0095594	Slightly white alabastrum(diploid) 3	5.236
	CNS0095595	Whole white alabastrum(diploid) 2	1.062
	CNS0095596	Whole white alabastrum(diploid) 3	2.827
	CNS0095597	Whole white alabastrum(diploid) 4	3.313
	CNS0095598	Silvery flower (diploied) 1	0.030
	CNS0095599	Silvery flower (diploied) 2	0.055
	CNS0095600	Silvery flower (diploied) 3	0.396
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.326
	CNS0095603	Golden flower (diploid) 3	0.374
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.999
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.768
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.783
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.831
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.715
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.012
	CNS0095614	Golden flower (tetraploid) 2	0.006
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	15.050
	CRR073298	Stem 2	23.953
	CRR073299	Stem 3	21.831
	CRR073300	Leaf 1	17.860
	CRR073301	Leaf 2	16.474
	CRR073302	Leaf 3	25.250
	CRR073303	Juvenile bud 1	0.986
	CRR073304	Juvenile bud 2	1.681
	CRR073305	Juvenile bud 3	3.246
	CRR073306	Third green 1	0.136
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.029
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.008
	CRR073313	Silver flowering 2	0.045
	CRR073314	Silver flowering 3	0.023
	CRR073315	Gold flowering 1	0.033
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.157
	CRR073319	Tawny withering 2	1.139
	CRR073320	Tawny withering 3	0.000