Gene detail

Detail information of GWHGAAZE006708

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009779784.1	7.4237E-161	PREDICTED: gibberellin 2-beta-dioxygenase-like [Nicotiana sylvestris]
Swissprot	tr\|Q9XG83\|G2OX_PHACN	6E-144	Gibberellin 2-beta-dioxygenase
trEMBL	tr\|A4URE9\|A4URE9_TOBAC	3E-160	Gibberellin 2-oxidase 5 {ECO:0000313\|EMBL:ABO70986.1}
TAIR10	AT1G30040.1	1E-105	gibberellin 2-oxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	30567997	30570345	-
GWHAAZE00000002	mRNA	30567997	30570345	-
GWHAAZE00000002	exon	30567997	30568242	-
GWHAAZE00000002	exon	30568731	30569091	-
GWHAAZE00000002	exon	30569951	30570345	-
GWHAAZE00000002	CDS	30569951	30570345	-
GWHAAZE00000002	CDS	30568731	30569091	-
GWHAAZE00000002	CDS	30567997	30568242	-

Transcript Sequence
>GWHTAAZE006716 ATGGTGGTGATATCTCAGCCATCACTAAACAATTTCTCTTTCATCAACACCACCGATACCCTCTTTAGTGAAATACCGATAATAGCCCTATCGGACCCTAATGCAAAGACCTTGATAGTTAAGGCTTGTGAGGAGTTTGGGTTTTTCAAGTTGGTCAACTATGGTGTCTCCATGGACCTCATGGCAAGATTGGAAGCTGAGGCACTCGAGTTCTTCAACCTACCACAGCATGAAAAAGACCAAACTGCCCCTCCTTACCCTTTTGGATATGGTAACAAGAGGATTGGACATAAGGGTGATATTGGTTGGGTTGAATACCTTCTCTTCACCATCAACCCTCAACTCGATTCCAACAAATCTCTCTCCGTTTTCCCAAGAAAGCAACAAGCTCTCTGGTGTCTTATAAATGAGTATATATCAGCAGTCAGAAATATGGCTTGTGAAGTGCTGGAACTGATAGCCGATGGGCTGGAGATTAGGCCTAGGAATATGTTGAGTAAGTTGTTGAGAGATGAAAACAGTGACTCTATTTTTAGACTTAACCATTACGCACCGTGGGCCGTTGATCATCAGCTTCTGCAAGAAATGAACGGTCGAGATTTGGTTGGGTTTGGGGAGCACACGGACCCACAAATAATATCAGTCATAAAATCGAACAACACGAGTGGCCTCCAAATCTGTCTCAGGGATGGAAGGTGGGTCTCTGTCCCACCTGATCCCTATTCCTTTTTCATTAGTGTTGATGACTCCTTACAGGTAATGACGAATGGGAGGTTTAAGAGTGTAAAGCATAGGGTTTTGACTGATTGCTTGAAGTCAAGGGTGTCATTGATATACTTTGGTGGACCACCTTTGAATGAAAAGATAGCACCTTTATCTTCACTTATGGAACGAACCGGAGAAGAGAGTTTATACAAGGAATTTACTTGGTCTGAATACATGAAATCTAATTATGAAACAAGATTGGGTGATGATAGGCTCAAGCCCTTTGAGAAACCCTAA

Network for GWHGAAZE006708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	25	116	4.60E-13
PF03171.21	2OG-FeII_Oxy	175	281	2.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.240
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	1.601
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.942
	SRR3591710	White floral bud	3.847
	SRR3591711	White flower	6.621
	SRR3591712	Green floral bud	0.744
	SRR3591713	Yellow flower	44.507
SRP173429	SRR8316895	Juvenile bud stage	0.189
	SRR8316896	Juvenile bud stage	1.054
	SRR8316897	Juvenile bud stage	0.141
	SRR8316894	Third green stage	0.760
	SRR8316900	Third green stage	1.324
	SRR8316901	Third green stage	1.780
	SRR8316898	Complete white stage	6.072
	SRR8316899	Complete white stage	11.051
	SRR8316903	Complete white stage	6.567
	SRR8316902	Silver flowering stage	1.170
	SRR8316904	Silver flowering stage	2.010
	SRR8316905	Silver flowering stage	1.388
	SRR8316906	Gold flowering stage	11.004
	SRR8316907	Gold flowering stage	7.547
	SRR8316908	Gold flowering stage	41.874
SRP132670	SRR6706286	Control	6.864
	SRR6706287	Light intensity 50%	1.885
	SRR6706288	Light intensity 20%	1.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.822
	CNS0095593	Slightly white alabastrum(diploid) 2	1.589
	CNS0095594	Slightly white alabastrum(diploid) 3	5.648
	CNS0095595	Whole white alabastrum(diploid) 2	1.281
	CNS0095596	Whole white alabastrum(diploid) 3	0.504
	CNS0095597	Whole white alabastrum(diploid) 4	5.844
	CNS0095598	Silvery flower (diploied) 1	2.719
	CNS0095599	Silvery flower (diploied) 2	4.249
	CNS0095600	Silvery flower (diploied) 3	4.550
	CNS0095601	Golden flower (diploid) 1	5.376
	CNS0095602	Golden flower (diploid) 2	15.362
	CNS0095603	Golden flower (diploid) 3	15.312
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.417
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.744
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.907
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.049
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.102
	CNS0095610	Silvery flower (diploied) 1	7.001
	CNS0095611	Silvery flower (diploied) 2	3.401
	CNS0095612	Silvery flower (diploied) 3	5.557
	CNS0095613	Golden flower (tetraploid) 1	11.713
	CNS0095614	Golden flower (tetraploid) 2	16.239
	CNS0095615	Golden flower (tetraploid) 3	4.019
CRA001975	CRR073297	Stem 1	0.148
	CRR073298	Stem 2	0.133
	CRR073299	Stem 3	0.293
	CRR073300	Leaf 1	1.038
	CRR073301	Leaf 2	0.822
	CRR073302	Leaf 3	0.291
	CRR073303	Juvenile bud 1	0.105
	CRR073304	Juvenile bud 2	1.478
	CRR073305	Juvenile bud 3	1.089
	CRR073306	Third green 1	0.630
	CRR073307	Third green 2	0.868
	CRR073308	Third green 3	0.315
	CRR073309	Second white 1	1.211
	CRR073310	Second white 2	0.992
	CRR073311	Second white 3	0.424
	CRR073312	Silver flowering 1	1.797
	CRR073313	Silver flowering 2	1.507
	CRR073314	Silver flowering 3	3.936
	CRR073315	Gold flowering 1	0.967
	CRR073316	Gold flowering 2	4.172
	CRR073317	Gold flowering 3	6.240
	CRR073318	Tawny withering 1	13.155
	CRR073319	Tawny withering 2	7.112
	CRR073320	Tawny withering 3	3.565