Gene detail

Detail information of GWHGAAZE006802

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002279808.1	PREDICTED: auxin response factor 6 [Vitis vinifera]
Swissprot	tr\|A2YG67\|ARFQ_ORYSI	Auxin response factor 17
trEMBL	tr\|F6HLU4\|F6HLU4_VITVI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G30330.1	auxin response factor 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	32271218	32280274	-
GWHAAZE00000002	mRNA	32271218	32280274	-
GWHAAZE00000002	exon	32271218	32271416	-
GWHAAZE00000002	exon	32271948	32272138	-
GWHAAZE00000002	exon	32272477	32273211	-
GWHAAZE00000002	exon	32273440	32273777	-
GWHAAZE00000002	exon	32274247	32274394	-
GWHAAZE00000002	exon	32274580	32274655	-
GWHAAZE00000002	exon	32275417	32275539	-
GWHAAZE00000002	exon	32275988	32276078	-
GWHAAZE00000002	exon	32276594	32276678	-
GWHAAZE00000002	exon	32276776	32276931	-
GWHAAZE00000002	exon	32277018	32277074	-
GWHAAZE00000002	exon	32277155	32277253	-
GWHAAZE00000002	exon	32278848	32278960	-
GWHAAZE00000002	exon	32279297	32280274	-
GWHAAZE00000002	five_prime_UTR	32279340	32280274	-
GWHAAZE00000002	CDS	32279297	32279339	-
GWHAAZE00000002	CDS	32278848	32278960	-
GWHAAZE00000002	CDS	32277155	32277253	-
GWHAAZE00000002	CDS	32277018	32277074	-
GWHAAZE00000002	CDS	32276776	32276931	-
GWHAAZE00000002	CDS	32276594	32276678	-
GWHAAZE00000002	CDS	32275988	32276078	-
GWHAAZE00000002	CDS	32275417	32275539	-
GWHAAZE00000002	CDS	32274580	32274655	-
GWHAAZE00000002	CDS	32274247	32274394	-
GWHAAZE00000002	CDS	32273440	32273777	-
GWHAAZE00000002	CDS	32272477	32273211	-
GWHAAZE00000002	CDS	32271948	32272138	-
GWHAAZE00000002	CDS	32271218	32271416	-

Transcript Sequence
>GWHTAAZE006810 TCATAGTTGTAAAAGCTCCATCCAGAAAGCCATTATTACTATTATTATCTAAACACTGCTACTGCTACTAGTCTCTCTACCTTCCGTTTTTTCCATTACTGGCAACCGTAGCACAAACCCTAGCTTTCCACTTTTCAACTTCAAAGCCCTATTCTTCCACACGTGTTTATACGTGTATTATTAATCTGTGCCCTATACTACTTTGCGTTGAAGTTTGTTCAAATTTGTCTTCTTTAATCGAAGATAACTAGCTGTTAACTTTGTTGCATTCATGAGCTGAATATGTGAATTTTGAGGTAGAGATCTGGTTAATTTTAGTGCTTTGGTGATAATTTAGGTGTTTTTATTTTTTTTGTGGATGTGAAGCTGAGATCTGAACTATTTAAGGCATGAGTGATTGGTTATTTTAAGGATTTGGCACATTTTTGGTGCTTTTCAAGAAGGAATTAGGGTTTTGAACTGAAAACGGGGTGGTTTGTTGGTTAAAAAAGTATTCTTCCCATGAAGTTCCTAGTTGCGTATTTGTGTGTTTGGGGTTGGGGGAAGAAGATCAGTAGCTGATGAAGCTGAAATCATTTGCATTTTGTAGCGGAACCGGTTTCGGTTGAAGATACTGAAATCAGTATCTTATGAAGGTTGTCTCCATAAAGTTTTTCAAAGCTTGTTCAATTTTTGTTATATGGTGGGTAGCAGGTTTTTGGTGGTGGTGGTGGTGGTGCCAAGTTGTACATTCCGAGTTGGGCTGGTTGTGAAGGCAAAGCAAGGTATTATGGTGTTTTTGGGTGAAAAAGTAAGTGGAATACGCATTTGTTAAGTTCTTGGGGTATATCTTATTTTGGGGAATTTTGTGCCGACTTTTTGGGGTTGGTAACTGTTTTTGGTCTGCTTTAGTGTCTGCCCTTTTTCTTGGTTAGAAGTTACTGTATAATCTTAAAATGAGACTCTCTTCTTCTGGTTTTGGTCAACAGTCTCCTGAAGGTGAGAAGAGATGCCTGAACTCTGAACTTTGGCATGCATGTGCTGGTCCTCTAGTTTCCCTACCTGCTGTTGGAAGCCGTGTTGTATATTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCATCAACTAACAAAGAAGTTGACTCTCAAATCCCTAACTACCCTAGCTTACCTCCGCAACTAATCTGTCAGCTTCACAATGTGACGATGCATGCTGATGTGGAGACAGATGAGGTTTACTCTCAAATGACCTTGCAACCACTGAACTCACAAGAGCAAAAGGAGGCCTTCCTTCCAGCAGATTTGGGTGCCCCAAGCAAACAGCCAACAAATTATTTTTGTAAAACATTGACTGCAAGTGACACTAGTACTCATGGTGGGTTTTCAGTTCCTCGTCGTGCAGCTGAAAAAGTGTTCCCTCCATTGGATTTCTCCCAGCAACCTCCAGCCCAAGAGTTAATTGCGAGGGATCTACATGATAATGAATGGAAATTCAGACACATATTTCGTGGCCAGCCCAAGAGGCATCTTCTTACGACAGGGTGGAGCGTGTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTCCTTTTCATATGGGCTAGTCCAACAGAATTTGTCATCTCTCTAGCCAAGTATGTTAAAGCTGTTTATCATACTCGAGTTTCTGTTGGCATGCGCTTTCGGATGCTTTTCGAAACAGAAGAATCAAGTGTTCGTCGCTATATGGGGACGATAACTGGCATAAGTGACTTGGATCCTGCTCGGTGGCCAAACTCGCATTGGCGCTCAGTGAAGGTAGGCTGGGATGAGTCTACAGCTGGAGAGAGGCAACCAAGAGTGTCGCTATGGGAGATTGAACCGTTAACAACTTTCCCCATGTATCCATCCCCATTTCCCCTCAGACTCAAGCGACCTTGGCCACCTGGACTGCCCTCTTTCAATGGGATGAAGGAGGAGGATCTGGGAATGAATTCTCCACTTATGTGGCTCCGTGGAGATAATATGGGTCAGGGATCCCATTCTCTTACCTTCCCCGGAATTGGGGTTTCACCCTGGACCCAGTCAAGGCTCGATTCCTCCATGCTTGGCATGCAAAATGATATTTATCAAGCTATGGCCTTTGCCGCTCTTCAGGATATGAGGCCCATGGATCCTCCCAAACAATCACCTTCATCATTTATACAATTTCAACAACCCCAAAGTGTCCCTAGCCGGTCCTCTGGTCTATTGCCGCCTCGGATAGTGCAGCAACCTCAGTCTCAACCCAACTTTCTTCATGGTCAACAGTTACAGCACCAAAACTCATTCAGTAATCAACACCAGCGGCAGAACCTGGTTGATCATCATCATCAGGTTTCGAGTGTTTTATCTACCTTGTCTCAATTTGGTTCTTCAAGCTCACATTCCCACTCACCATCTATGCAAACAATCTCCTCCATGCAACAGCAAAACTTGCCTGATTCAAATCCAATGACCAATCCTATTGTTTCTCCTCTACACTCTCTTTTGAGCCCCTTCCCGCATGACGAAACCTCACAAATTCTCAACATACCTAGATCAAGTGCCATAATGACCTCTACTGGTTGGCCACCAAAGCGAGTTGCTGTTGATAATAGTCTTCTTCCTTCTGGACCATCATCATATGGCCTGGAACAATTGGCCCCACCCCATACAAACATCTCTGAAAATGTTGATTTTACTTTGCCCCCGTTTCCGGGTAGGGAGTGTTTGGTTGACCATGAAGGTAATGATCCCCAGAGCCATCTTTTGTTTGGGGTTAACATAGATGCATCATCTCTTCTCATGCAGAATGGAATGTCAAGTCTTAGGGGAGTGGGTAGTGATGGTGACTCTACAAACATTCCCTTCGCATCTTCCAATTATTTGGATACGGTTGGCTCTGATTTTTCACTTAATCCGGATATGACCCCTTCGAGTTGTATTGATGAATCAGGTTTCCTTCATTCTCCTGAAAATGTGGGGCAAACAAACCCACCAACCAGAACCTTTGTTAAGGTTTACAAGTTAGGGTCCTTCGGTAGGTCACTAGATATTGGCAAGTTCAGCAGCTACCATGAGCTGAAGAAAGAGCTTGCTCAAATGTTCGGACTCGAGGGCCAATTGGAGGACCCGCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCAGGAATTTGTGAATAGTGTATGGTGTATCAAGATACTCTCACTACAAGAACTGCAACAGATGGGCAAACGAGGCCTCGAGCTTCTGAACTCGGTCCCAGTTCAGAAACTCTCTAATAATGGCTGCGAAAACTATGTGGGCCCACAGGAGTCAAGAAATTTGAGCCCGGGGATTGCGTCTGTGGGGTCGCTTGATTACTGA

Network for GWHGAAZE006802

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	127	223	8.20E-20
PF06507.14	Auxin_resp	215	281	3.50E-24
PF02309.17	AUX_IAA	678	773	2.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	92.671
	SRR3591706	second leaf	28.334
	SRR3591707	mature leaf	24.344
	SRR3591708	Shoot apex	118.866
	SRR3591709	Stem	70.016
	SRR3591710	White floral bud	49.964
	SRR3591711	White flower	74.592
	SRR3591712	Green floral bud	53.788
	SRR3591713	Yellow flower	42.767
SRP173429	SRR8316895	Juvenile bud stage	24.208
	SRR8316896	Juvenile bud stage	29.234
	SRR8316897	Juvenile bud stage	15.620
	SRR8316894	Third green stage	14.415
	SRR8316900	Third green stage	29.698
	SRR8316901	Third green stage	30.326
	SRR8316898	Complete white stage	7.626
	SRR8316899	Complete white stage	33.144
	SRR8316903	Complete white stage	20.948
	SRR8316902	Silver flowering stage	26.311
	SRR8316904	Silver flowering stage	46.986
	SRR8316905	Silver flowering stage	24.955
	SRR8316906	Gold flowering stage	109.819
	SRR8316907	Gold flowering stage	90.700
	SRR8316908	Gold flowering stage	114.954
SRP132670	SRR6706286	Control	42.656
	SRR6706287	Light intensity 50%	41.984
	SRR6706288	Light intensity 20%	43.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.601
	CNS0095593	Slightly white alabastrum(diploid) 2	20.751
	CNS0095594	Slightly white alabastrum(diploid) 3	16.201
	CNS0095595	Whole white alabastrum(diploid) 2	19.308
	CNS0095596	Whole white alabastrum(diploid) 3	11.311
	CNS0095597	Whole white alabastrum(diploid) 4	15.246
	CNS0095598	Silvery flower (diploied) 1	54.670
	CNS0095599	Silvery flower (diploied) 2	41.158
	CNS0095600	Silvery flower (diploied) 3	44.230
	CNS0095601	Golden flower (diploid) 1	39.935
	CNS0095602	Golden flower (diploid) 2	56.311
	CNS0095603	Golden flower (diploid) 3	53.428
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.488
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.004
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.252
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.696
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.927
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.640
	CNS0095610	Silvery flower (diploied) 1	34.082
	CNS0095611	Silvery flower (diploied) 2	43.022
	CNS0095612	Silvery flower (diploied) 3	38.059
	CNS0095613	Golden flower (tetraploid) 1	17.482
	CNS0095614	Golden flower (tetraploid) 2	32.323
	CNS0095615	Golden flower (tetraploid) 3	42.171
CRA001975	CRR073297	Stem 1	54.400
	CRR073298	Stem 2	53.251
	CRR073299	Stem 3	45.767
	CRR073300	Leaf 1	57.560
	CRR073301	Leaf 2	53.625
	CRR073302	Leaf 3	34.630
	CRR073303	Juvenile bud 1	37.886
	CRR073304	Juvenile bud 2	35.607
	CRR073305	Juvenile bud 3	54.728
	CRR073306	Third green 1	20.986
	CRR073307	Third green 2	12.987
	CRR073308	Third green 3	21.108
	CRR073309	Second white 1	49.965
	CRR073310	Second white 2	40.523
	CRR073311	Second white 3	58.401
	CRR073312	Silver flowering 1	34.446
	CRR073313	Silver flowering 2	28.705
	CRR073314	Silver flowering 3	22.811
	CRR073315	Gold flowering 1	13.305
	CRR073316	Gold flowering 2	26.518
	CRR073317	Gold flowering 3	14.441
	CRR073318	Tawny withering 1	53.718
	CRR073319	Tawny withering 2	47.667
	CRR073320	Tawny withering 3	47.959