Gene detail

Detail information of GWHGAAZE006844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17312.1	6.72558E-53	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q84JP1\|NFYA7_ARATH	2E-36	Nuclear transcription factor Y subunit A-7
trEMBL	tr\|A0A068V9V1\|A0A068V9V1_COFCA	3E-53	Coffea canephora DH200=94 genomic scaffold, scaffold_153 {ECO:0000313\|EMBL:CDP17312.1}
TAIR10	AT1G30500.2	5E-28	nuclear factor Y, subunit A7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	33034671	33037166	+
GWHAAZE00000002	mRNA	33034671	33037166	+
GWHAAZE00000002	exon	33034671	33034752	+
GWHAAZE00000002	exon	33034829	33034914	+
GWHAAZE00000002	exon	33035319	33035420	+
GWHAAZE00000002	exon	33035541	33035705	+
GWHAAZE00000002	exon	33036223	33036456	+
GWHAAZE00000002	exon	33036984	33037166	+
GWHAAZE00000002	CDS	33034671	33034752	+
GWHAAZE00000002	CDS	33034829	33034914	+
GWHAAZE00000002	CDS	33035319	33035420	+
GWHAAZE00000002	CDS	33035541	33035705	+
GWHAAZE00000002	CDS	33036223	33036456	+
GWHAAZE00000002	CDS	33036984	33037166	+

Transcript Sequence
>GWHTAAZE006852 ATGCGCAGAGACTGTAAAATGTTTTATGGGTTCCCTATGAATTGCAATTGTGTGAATCTTATCCCTCCATCTGAATGTATAGCGACTCAACTAGAACTGATTCTCCAAAATGAGGATCCTCATTTCCGCAGGCTAGGAACTTCTTGTGCTGTCTTTCGTTCTTTACTGGGGCAAGCAGCTTACCCATATCCAGATCCTTACTACAGAAGCATCTTTGCTCCATATGATGCACAACCATATGCTGCCCAGCCTTATCCTTCACAACCAATGGTCCATCTTCAGTTGATGGGAATTCAGCAGGCTGGAGTTCCTTTGCCATCAGATGCAGTTGAGGAGCCTGTATTTGTTAATGCAAAACAGTATCATGGGATCTTGAGACGTCGCCAATCTCGGGCCAAAGCGGAATCAGAAAATAAAGCTCTCAAATCTCGGAAGAATGCGAGGTGGTGGGGAAAGAGGTTGACTATGAAAAACGGAAGATCCGGTGGTGGGGCTCCGGCGGCTGCTCGGGTGGCGGGGGAAGAAGCTGAAGAGTTATGGAGGTTTTGCCTTGAGAGGTGGCGAAGGGAGAAGGCGAAGGTGAAATCGTTGGAGAGGAGTCATCATGGTGAGGATGGGGGGAAGGAAAGGCTATGGAGGAAGTGGTGGAAGCGGCACAATTTGGGAATGCCATACCTGCATGAATCCCGACATCAGCATGCTCTGAGAAGAGCTAGAGGCTGTGGGGGCCGTTTCCAAAAGAAAAACGAGAACCAACAGAAAGACCCTTCCTCCACTAACAACAGTTCGCAAAGCAATATCAATCTCAACTCCGATAAAAGCGAACGCGCTTCTTCAGACAGTGGATACTGA

Network for GWHGAAZE006844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02045.16	CBFB_NFYA	112	146	1.00E-10
PF02045.16	CBFB_NFYA	210	245	5.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	pathway	mapID
K08064	NFYA, HAP2	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0016602	cellular_component	CCAAT-binding factor complex
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.626
	SRR3591706	second leaf	14.325
	SRR3591707	mature leaf	30.090
	SRR3591708	Shoot apex	15.557
	SRR3591709	Stem	19.401
	SRR3591710	White floral bud	19.029
	SRR3591711	White flower	28.509
	SRR3591712	Green floral bud	12.595
	SRR3591713	Yellow flower	30.442
SRP173429	SRR8316895	Juvenile bud stage	11.065
	SRR8316896	Juvenile bud stage	15.848
	SRR8316897	Juvenile bud stage	7.183
	SRR8316894	Third green stage	6.010
	SRR8316900	Third green stage	12.275
	SRR8316901	Third green stage	12.851
	SRR8316898	Complete white stage	9.500
	SRR8316899	Complete white stage	19.331
	SRR8316903	Complete white stage	16.274
	SRR8316902	Silver flowering stage	18.172
	SRR8316904	Silver flowering stage	19.937
	SRR8316905	Silver flowering stage	9.572
	SRR8316906	Gold flowering stage	31.245
	SRR8316907	Gold flowering stage	34.483
	SRR8316908	Gold flowering stage	30.808
SRP132670	SRR6706286	Control	19.867
	SRR6706287	Light intensity 50%	19.371
	SRR6706288	Light intensity 20%	19.156
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.392
	CNS0095593	Slightly white alabastrum(diploid) 2	13.676
	CNS0095594	Slightly white alabastrum(diploid) 3	16.892
	CNS0095595	Whole white alabastrum(diploid) 2	11.043
	CNS0095596	Whole white alabastrum(diploid) 3	6.620
	CNS0095597	Whole white alabastrum(diploid) 4	8.276
	CNS0095598	Silvery flower (diploied) 1	19.052
	CNS0095599	Silvery flower (diploied) 2	13.668
	CNS0095600	Silvery flower (diploied) 3	19.878
	CNS0095601	Golden flower (diploid) 1	17.665
	CNS0095602	Golden flower (diploid) 2	22.763
	CNS0095603	Golden flower (diploid) 3	22.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.846
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.753
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.568
	CNS0095610	Silvery flower (diploied) 1	18.101
	CNS0095611	Silvery flower (diploied) 2	16.447
	CNS0095612	Silvery flower (diploied) 3	10.534
	CNS0095613	Golden flower (tetraploid) 1	11.990
	CNS0095614	Golden flower (tetraploid) 2	16.835
	CNS0095615	Golden flower (tetraploid) 3	18.483
CRA001975	CRR073297	Stem 1	10.249
	CRR073298	Stem 2	9.950
	CRR073299	Stem 3	9.434
	CRR073300	Leaf 1	9.370
	CRR073301	Leaf 2	12.097
	CRR073302	Leaf 3	9.888
	CRR073303	Juvenile bud 1	11.376
	CRR073304	Juvenile bud 2	8.759
	CRR073305	Juvenile bud 3	9.934
	CRR073306	Third green 1	28.228
	CRR073307	Third green 2	25.586
	CRR073308	Third green 3	24.718
	CRR073309	Second white 1	12.939
	CRR073310	Second white 2	21.166
	CRR073311	Second white 3	18.403
	CRR073312	Silver flowering 1	13.113
	CRR073313	Silver flowering 2	13.341
	CRR073314	Silver flowering 3	11.216
	CRR073315	Gold flowering 1	11.098
	CRR073316	Gold flowering 2	12.617
	CRR073317	Gold flowering 3	10.023
	CRR073318	Tawny withering 1	6.995
	CRR073319	Tawny withering 2	4.929
	CRR073320	Tawny withering 3	7.384