Detail information of GWHGAAZE006985


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004235666.10PREDICTED: conserved oligomeric Golgi complex subunit 1 [Solanum lycopersicum]
trEMBLtr|K4BML9|K4BML9_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g120700.2.1}
TAIR10AT5G16300.10Vps51/Vps67 family (components of vesicular transport) protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3565867035668516-
GWHAAZE00000002mRNA3565867035668516-
GWHAAZE00000002exon3565867035658810-
GWHAAZE00000002exon3566043735660614-
GWHAAZE00000002exon3566087135661050-
GWHAAZE00000002exon3566164835661853-
GWHAAZE00000002exon3566517735665371-
GWHAAZE00000002exon3566631835668516-
GWHAAZE00000002CDS3566631835668516-
GWHAAZE00000002CDS3566517735665371-
GWHAAZE00000002CDS3566164835661853-
GWHAAZE00000002CDS3566087135661050-
GWHAAZE00000002CDS3566043735660614-
GWHAAZE00000002CDS3565867035658810-
Transcript Sequence

Network for GWHGAAZE006985

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08700.12Vps5122927.60E-15
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.435
SRR3591706second leaf14.522
SRR3591707mature leaf10.018
SRR3591708Shoot apex16.893
SRR3591709Stem17.900
SRR3591710White floral bud15.898
SRR3591711White flower15.236
SRR3591712Green floral bud19.078
SRR3591713Yellow flower14.741
SRP173429 SRR8316895Juvenile bud stage 10.093
SRR8316896Juvenile bud stage 15.512
SRR8316897Juvenile bud stage 7.862
SRR8316894Third green stage 8.967
SRR8316900Third green stage 20.685
SRR8316901Third green stage 19.745
SRR8316898Complete white stage 6.347
SRR8316899Complete white stage 18.565
SRR8316903Complete white stage 13.288
SRR8316902Silver flowering stage5.843
SRR8316904Silver flowering stage12.024
SRR8316905Silver flowering stage4.387
SRR8316906Gold flowering stage 13.776
SRR8316907Gold flowering stage 14.120
SRR8316908Gold flowering stage 18.126
SRP132670SRR6706286Control16.943
SRR6706287Light intensity 50%20.699
SRR6706288Light intensity 20%20.851
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.405
CNS0095593Slightly white alabastrum(diploid) 28.325
CNS0095594Slightly white alabastrum(diploid) 36.583
CNS0095595Whole white alabastrum(diploid) 28.380
CNS0095596Whole white alabastrum(diploid) 37.947
CNS0095597Whole white alabastrum(diploid) 49.075
CNS0095598Silvery flower (diploied) 17.511
CNS0095599Silvery flower (diploied) 26.972
CNS0095600Silvery flower (diploied) 319.175
CNS0095601Golden flower (diploid) 14.761
CNS0095602Golden flower (diploid) 217.100
CNS0095603Golden flower (diploid) 316.421
CNS0095604Slightly white alabastrum(tetraploid) 113.678
CNS0095605Slightly white alabastrum(tetraploid) 210.256
CNS0095606Slightly white alabastrum(tetraploid) 323.723
CNS0095607Whole white alabastrum(tetraploid) 19.218
CNS0095608Whole white alabastrum(tetraploid) 29.619
CNS0095609Whole white alabastrum(tetraploid) 320.237
CNS0095610Silvery flower (diploied) 117.336
CNS0095611Silvery flower (diploied) 215.038
CNS0095612Silvery flower (diploied) 315.678
CNS0095613Golden flower (tetraploid) 15.980
CNS0095614Golden flower (tetraploid) 213.208
CNS0095615Golden flower (tetraploid) 313.627
CRA001975CRR073297Stem 120.023
CRR073298Stem 219.583
CRR073299Stem 315.794
CRR073300Leaf 125.643
CRR073301Leaf 222.779
CRR073302Leaf 317.501
CRR073303Juvenile bud 120.010
CRR073304Juvenile bud 215.839
CRR073305Juvenile bud 328.074
CRR073306Third green 18.032
CRR073307Third green 26.233
CRR073308Third green 39.241
CRR073309Second white 16.397
CRR073310Second white 27.415
CRR073311Second white 310.431
CRR073312Silver flowering 18.427
CRR073313Silver flowering 28.653
CRR073314Silver flowering 38.479
CRR073315Gold flowering 15.129
CRR073316Gold flowering 27.292
CRR073317Gold flowering 35.155
CRR073318Tawny withering 113.970
CRR073319Tawny withering 29.528
CRR073320Tawny withering 314.843