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Detail information of GWHGAAZE006985
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_004235666.1
0
PREDICTED: conserved oligomeric Golgi complex subunit 1 [Solanum lycopersicum]
trEMBL
tr|K4BML9|K4BML9_SOLLC
0
Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g120700.2.1}
TAIR10
AT5G16300.1
0
Vps51/Vps67 family (components of vesicular transport) protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
35658670
35668516
-
GWHAAZE00000002
mRNA
35658670
35668516
-
GWHAAZE00000002
exon
35658670
35658810
-
GWHAAZE00000002
exon
35660437
35660614
-
GWHAAZE00000002
exon
35660871
35661050
-
GWHAAZE00000002
exon
35661648
35661853
-
GWHAAZE00000002
exon
35665177
35665371
-
GWHAAZE00000002
exon
35666318
35668516
-
GWHAAZE00000002
CDS
35666318
35668516
-
GWHAAZE00000002
CDS
35665177
35665371
-
GWHAAZE00000002
CDS
35661648
35661853
-
GWHAAZE00000002
CDS
35660871
35661050
-
GWHAAZE00000002
CDS
35660437
35660614
-
GWHAAZE00000002
CDS
35658670
35658810
-
Transcript Sequence
>GWHTAAZE006993 ATGGCACCACCACCGTCACAACAGTCGACGGTGGCCGGCGACGGAAGAACCTACCAACTCTCCAAGGACGCAGAATCTCTCTTCCGAACAAAACCTATCTCCGAGATCCGCAATGTAGAGACCGCCACCAGAAAACAGATCCAAGACAAGAGCGAAGAGCTCCGTCAATTAGTCGGCAATCGCTACCGAGATCTCATCGATTCCGCCGACTCAATCGTTTTGATGAAATCCTCCTGCGAATCGATCTCCGCCAACATCTCCGCCATCCACGGTGGAATCATTCATTCTCTCTCCTCCACTGTTACCGCATTTCCCACCGTCAGTCCAAGCCCTAGCCGAACCAAAATTTACGGAATTGCGTGTAGAGTGAAGTATCTGGTGGATACACCGGAGAATATTTGGGGTTGTTTGGACGAGAGTATGTTTTTAGAGGCGGCGGCGAGGTATATGAGAGCTAAGCAGGTTCATTTTAGCTTAATTCACGGCGAGGATGAAAAGGAAAAGAATGTGCTGTCAAATTTCCCTTTGCTTCAGCATCAGTGGCAGATCGTGGAGAGTTTCAAGGTCCAGATCTCGCAGAGGAGTAGGGAGAGATTGTTGGAACATGCTCTTGATTTAGGGATTGGAGCTTATGCTGATGCACTTGCTGCGATTGCGATAATTGACGAGCTCGATCCAAATCAGGTTTTGTCTTTGTTACTCGAGTCGAGAAAGTCTTACATTTCGATGAAATTAGGTGCTTGTTCGAATTCTAGTGCTACTAGTTCTGATGTAATTTCGGTGTTTTGTGAGGTTTTGAAGATAATTCAAGTTAGTGTAGGGCAAGTAGGGGAGTTGTACTTGCAAGTGTTGAGTGATATGCCTTTGTTTTACAAGACTATATTGAGTTCACCTCCTACTTCTCAGTTGTTTGGTGGAATACCTAATCCTGATGAGGAAGTGAGGTTGTGGAAAGTTTTTAGGGATAAATTAGAGTCTGTAATGGTAGTGCTTGATCGGGACTATATAGCTAAAACCTGTTCTGATTGGTTGAGGAACTGTGGGAAAGAGATTATTAACAAGATCAATGGGAGGTACTTGATTGATGCGATTGAAAATGGTCAACAGCTCGCTGCGGCTGAGAAGTTGATACGAGAGACTACGGAAGGAAAGCAAGTGTTGGAAGGGAGTATAGAGTGGCTCAAGAAAGTTTTTGGTTCTGAGATTGAATTGCCATGGAAGAGAACTCGTGAACTCGTCTTGGGAGATGACTCAGATCTATGGGATGAGATATTTGAAGATGCTTTTGCTCAGAGGATGAAAGCAATCATTGATTTGGGATTCAATGAATTGAACAAATCTGTGAATGTGAAGGAGTCGATTCATGCAATTGCTGGGGTTTCTGGTGATTTCCAGGCCTACATGAATCGATCTCCCAGGGGCGGTGGGGTTTGGTTCTTGGATCCTAACAGTAAAAAAGTTGGTTTAGTAACTGGCTCTAAAGGTCAGACTGAGGAAAACGATTTCCGCAACTGCCTTGGTGCATATTTTGGGACTGAAGTAAGCCGAATTAGAGATGCGGTGGATAACTGTTGTGAGAGTGTGCTTGAAGACTTATTATCCTTCTTAGATTCTCCGAAGGCCTCTTCGAGGTTAAAGGTTTTAGCTCCTTATCTACAAAATGTCTGTTATGGGAGCATGTCAACCATAATGACTGAACTCAAGAATGAGATGGAGAACTTGTATGTGGGCCTGAAAAATGGCAACAAAGAAGGTGAGGCTGTGCCACCACCTGCTGTAATTGTAGAGAGATCTTTATTTATTGGGCGACTCTTGCTTGCATTTCAAAAGCACTCGAGACATGTTCCTGTGATACTTGGGTCACCAAGGTTATGGGTGAATGGGACTATGGCTGCCATCTCTGGTAATTCAAAATCTGTGTTGAGATATTCTAGAGTGGGTGTTGATTCTTCCTTGCCTGATAACCCCAGAAAGAAAATGCTCGATTCCCCTAAAAGACAAACATCCATGGCCACTTCTGCTTTGTTTGGACTTGATGACAGTTCGAGCCCACAACTTGATGAACTCAGTAGAACAACACAAGATCTTTGCATAAGAGCTCACAACCTGTGGATCACATGGGTTTCTGATGAGCTTTCTCTTATCCTCTCGCACAATCTCAGACAAGACGACAGTTTATCAGCAACCACTCCCTTGAGAGGCTGGGAGGAGACAATAGTCAAGCAAGAACAGTCTGCTGAGAGCCAATCGGAGATGAAAATATCACTGCCCTCAATGCCTTCTCTATATATTACGTCATTTCTATTCCAAGCGTGTGAAGAAATTGACCGAGTTGGAGGTCATGTGCTCGACAGAATAATTTTGCAAAATTTTGCTTCAAGACTATTAGAAAAGGTCATTGGTATATACGGGGATTTCCTTTCAACTGAAGAGGTTCATGGATCAAAAATTTCAGAAAAAGGAGTTTTGCAAGTTTTATTAGATTTAAGATTTGCCGCCGATGTTCTTTCAGGGGGTGATGTAAGTGGAACTGAGCAGACATCAAAAACTCCAAAGCTGAAGATTCCTTTTAGACGCAAGCAGGATGTACACCAGATAAAGTATGAACCATATCTTTGGGAGAACGAGAGGCAGTCCTATCTACGGCACGCTGTCCTCTTTGGGTTTTTTGTGCAACTTTATCGGATGTACACAGATACTGTCCAGAAATTACCTACTAATTCAGAATCAAATATAATGAGATGCTCTATTGTTCCTCGCTTCAAGTACCTCCCCATCAGTGCTCCAGCATTGTCTGCAAAGGGGGGTACCAAGGCATCGATTTCAACATCTATGGATGATGTTTCTTCTAGAAGTTCCTGGAAAAGTTTTACTCATGATGAACTCTCCCGAAGCATTGATATTGATGAGAACTCAAGCTTTGGGGTGGCAACACCTTTCCTAAAGTCGTTCATGCAGGTTGGCAGCAGATTTGGGGAAAGCACGCTGAAGTTTGGATCCATGCTAACAGATGGGCAAGTTGGCAGGTTCGGTGACATATTACCTGCCCAAGCTGCTGGACTTCTTTCTTCATTTACAGCCGGTAGATCGGATTCTTGA
Network for GWHGAAZE006985
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF08700.12
Vps51
22
92
7.60E-15
Protein Sequence
>GWHPAAZE006989 MAPPPSQQSTVAGDGRTYQLSKDAESLFRTKPISEIRNVETATRKQIQDKSEELRQLVGNRYRDLIDSADSIVLMKSSCESISANISAIHGGIIHSLSSTVTAFPTVSPSPSRTKIYGIACRVKYLVDTPENIWGCLDESMFLEAAARYMRAKQVHFSLIHGEDEKEKNVLSNFPLLQHQWQIVESFKVQISQRSRERLLEHALDLGIGAYADALAAIAIIDELDPNQVLSLLLESRKSYISMKLGACSNSSATSSDVISVFCEVLKIIQVSVGQVGELYLQVLSDMPLFYKTILSSPPTSQLFGGIPNPDEEVRLWKVFRDKLESVMVVLDRDYIAKTCSDWLRNCGKEIINKINGRYLIDAIENGQQLAAAEKLIRETTEGKQVLEGSIEWLKKVFGSEIELPWKRTRELVLGDDSDLWDEIFEDAFAQRMKAIIDLGFNELNKSVNVKESIHAIAGVSGDFQAYMNRSPRGGGVWFLDPNSKKVGLVTGSKGQTEENDFRNCLGAYFGTEVSRIRDAVDNCCESVLEDLLSFLDSPKASSRLKVLAPYLQNVCYGSMSTIMTELKNEMENLYVGLKNGNKEGEAVPPPAVIVERSLFIGRLLLAFQKHSRHVPVILGSPRLWVNGTMAAISGNSKSVLRYSRVGVDSSLPDNPRKKMLDSPKRQTSMATSALFGLDDSSSPQLDELSRTTQDLCIRAHNLWITWVSDELSLILSHNLRQDDSLSATTPLRGWEETIVKQEQSAESQSEMKISLPSMPSLYITSFLFQACEEIDRVGGHVLDRIILQNFASRLLEKVIGIYGDFLSTEEVHGSKISEKGVLQVLLDLRFAADVLSGGDVSGTEQTSKTPKLKIPFRRKQDVHQIKYEPYLWENERQSYLRHAVLFGFFVQLYRMYTDTVQKLPTNSESNIMRCSIVPRFKYLPISAPALSAKGGTKASISTSMDDVSSRSSWKSFTHDELSRSIDIDENSSFGVATPFLKSFMQVGSRFGESTLKFGSMLTDGQVGRFGDILPAQAAGLLSSFTAGRSDS
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
29.435
SRR3591706
second leaf
14.522
SRR3591707
mature leaf
10.018
SRR3591708
Shoot apex
16.893
SRR3591709
Stem
17.900
SRR3591710
White floral bud
15.898
SRR3591711
White flower
15.236
SRR3591712
Green floral bud
19.078
SRR3591713
Yellow flower
14.741
SRP173429
SRR8316895
Juvenile bud stage
10.093
SRR8316896
Juvenile bud stage
15.512
SRR8316897
Juvenile bud stage
7.862
SRR8316894
Third green stage
8.967
SRR8316900
Third green stage
20.685
SRR8316901
Third green stage
19.745
SRR8316898
Complete white stage
6.347
SRR8316899
Complete white stage
18.565
SRR8316903
Complete white stage
13.288
SRR8316902
Silver flowering stage
5.843
SRR8316904
Silver flowering stage
12.024
SRR8316905
Silver flowering stage
4.387
SRR8316906
Gold flowering stage
13.776
SRR8316907
Gold flowering stage
14.120
SRR8316908
Gold flowering stage
18.126
SRP132670
SRR6706286
Control
16.943
SRR6706287
Light intensity 50%
20.699
SRR6706288
Light intensity 20%
20.851
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
6.405
CNS0095593
Slightly white alabastrum(diploid) 2
8.325
CNS0095594
Slightly white alabastrum(diploid) 3
6.583
CNS0095595
Whole white alabastrum(diploid) 2
8.380
CNS0095596
Whole white alabastrum(diploid) 3
7.947
CNS0095597
Whole white alabastrum(diploid) 4
9.075
CNS0095598
Silvery flower (diploied) 1
7.511
CNS0095599
Silvery flower (diploied) 2
6.972
CNS0095600
Silvery flower (diploied) 3
19.175
CNS0095601
Golden flower (diploid) 1
4.761
CNS0095602
Golden flower (diploid) 2
17.100
CNS0095603
Golden flower (diploid) 3
16.421
CNS0095604
Slightly white alabastrum(tetraploid) 1
13.678
CNS0095605
Slightly white alabastrum(tetraploid) 2
10.256
CNS0095606
Slightly white alabastrum(tetraploid) 3
23.723
CNS0095607
Whole white alabastrum(tetraploid) 1
9.218
CNS0095608
Whole white alabastrum(tetraploid) 2
9.619
CNS0095609
Whole white alabastrum(tetraploid) 3
20.237
CNS0095610
Silvery flower (diploied) 1
17.336
CNS0095611
Silvery flower (diploied) 2
15.038
CNS0095612
Silvery flower (diploied) 3
15.678
CNS0095613
Golden flower (tetraploid) 1
5.980
CNS0095614
Golden flower (tetraploid) 2
13.208
CNS0095615
Golden flower (tetraploid) 3
13.627
CRA001975
CRR073297
Stem 1
20.023
CRR073298
Stem 2
19.583
CRR073299
Stem 3
15.794
CRR073300
Leaf 1
25.643
CRR073301
Leaf 2
22.779
CRR073302
Leaf 3
17.501
CRR073303
Juvenile bud 1
20.010
CRR073304
Juvenile bud 2
15.839
CRR073305
Juvenile bud 3
28.074
CRR073306
Third green 1
8.032
CRR073307
Third green 2
6.233
CRR073308
Third green 3
9.241
CRR073309
Second white 1
6.397
CRR073310
Second white 2
7.415
CRR073311
Second white 3
10.431
CRR073312
Silver flowering 1
8.427
CRR073313
Silver flowering 2
8.653
CRR073314
Silver flowering 3
8.479
CRR073315
Gold flowering 1
5.129
CRR073316
Gold flowering 2
7.292
CRR073317
Gold flowering 3
5.155
CRR073318
Tawny withering 1
13.970
CRR073319
Tawny withering 2
9.528
CRR073320
Tawny withering 3
14.843