Gene detail

Detail information of GWHGAAZE006986

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010653838.1	PREDICTED: CCR4-NOT transcription complex subunit 3 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q6NKW9\|E138_ARATH	Glucan endo-1,3-beta-glucosidase 8 (Precursor)
trEMBL	tr\|D7TI48\|D7TI48_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29924.3}
TAIR10	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	35683221	35719170	+
GWHAAZE00000002	mRNA	35683221	35719170	+
GWHAAZE00000002	exon	35683221	35683313	+
GWHAAZE00000002	exon	35683397	35683528	+
GWHAAZE00000002	exon	35687441	35687557	+
GWHAAZE00000002	exon	35688090	35688140	+
GWHAAZE00000002	exon	35688238	35688315	+
GWHAAZE00000002	exon	35688517	35688606	+
GWHAAZE00000002	exon	35688683	35688829	+
GWHAAZE00000002	exon	35689067	35689174	+
GWHAAZE00000002	exon	35692593	35692661	+
GWHAAZE00000002	exon	35693397	35694104	+
GWHAAZE00000002	exon	35694737	35694910	+
GWHAAZE00000002	exon	35696616	35696781	+
GWHAAZE00000002	exon	35697488	35697633	+
GWHAAZE00000002	exon	35705184	35705465	+
GWHAAZE00000002	exon	35706379	35706513	+
GWHAAZE00000002	exon	35707328	35707509	+
GWHAAZE00000002	exon	35716525	35716812	+
GWHAAZE00000002	exon	35718063	35719170	+
GWHAAZE00000002	CDS	35683221	35683313	+
GWHAAZE00000002	CDS	35683397	35683528	+
GWHAAZE00000002	CDS	35687441	35687557	+
GWHAAZE00000002	CDS	35688090	35688140	+
GWHAAZE00000002	CDS	35688238	35688315	+
GWHAAZE00000002	CDS	35688517	35688606	+
GWHAAZE00000002	CDS	35688683	35688829	+
GWHAAZE00000002	CDS	35689067	35689174	+
GWHAAZE00000002	CDS	35692593	35692661	+
GWHAAZE00000002	CDS	35693397	35694104	+
GWHAAZE00000002	CDS	35694737	35694910	+
GWHAAZE00000002	CDS	35696616	35696781	+
GWHAAZE00000002	CDS	35697488	35697633	+
GWHAAZE00000002	CDS	35705184	35705465	+
GWHAAZE00000002	CDS	35706379	35706513	+
GWHAAZE00000002	CDS	35707328	35707509	+
GWHAAZE00000002	CDS	35716525	35716812	+
GWHAAZE00000002	CDS	35718063	35719170	+

Transcript Sequence
>GWHTAAZE006994 ATGGGAGCTAGCCGAAAGCTACAGGGCGAGATCGATCGAGTCCTGAAAAAAGTTCAAGAGGGAGTTGATGTGTTTGATAGTATATGGAACAAGGTTTACGATACGGACAATGCGAATCAGAAGGAGAAGTTTGAGGCCGACTTGAAGAAGGAGATTAAGAAACTGCAGAGGTATAGAGATCAGATTAAGACATGGATTCAGTCCAGCGAGATCAAGGATAAGAAGGCTCTGATGGATGCCCGAAAGCAAATTGAACGCGAAATGGAACGATTTAAGATATGTGAAAAGGAAACAAAGACAAAAGCCTTTTCCAAAGAAGGACTGGGACAGCAACCTAAAACGGATCCTAAGGAAAAAGCTAAATCAGAGACAAGAGATTGGTTGAACAATGTGGATGTGTTTTTAGATATGCTAAGTGCAATAGATGATTTACAGTTGTTGAGCAGATTTCATGGTGCTTTTATAGGCCCGGTTTCAGAATTGGAAAACCAAATTGATAGCTTTGAAGCTGAGATGGAGGGGCTATCTGTCAAGAAAGGGAAAACGAGGCCACCAAGATTGACACATTTGGAGACTTCTATCACTCGGCACAAGGCTCATATCATGAAATTAGAATTGATTTTGAGGTTATTGGATAATGATGAGTTGAGCCCGGAGCAAGTCAATGATGTTAAGGATTTCTTAGACGACTACGTGGAACGTAATCAGGAGGACTTTGAAGAATTTGATGACGTCGATGAGCTTTACAGTTCTTTACCATTAGACAAGGTGGAACTTGAAGATCTAGTTACTGTTGGCCCTCCTGGACTTGTTAAGGGTGTTAGTGCCACCAGTGCAGTTTTAAGTATGAAAACTTCTTTGACGTCATCGCCAGCTCAGCCGCCGGTTACTTCTGCTCTGGACCAAGTTGAGGACACAGTTTCCCAGGACAGTAATTCCGAGGCTATTGCAAGGACTCCTCCTAAAAGTAGTTCAGTTGTATCTACCCCTACAACACCAGCCGGGACCCACGCAACTACCGGTACCATAAATGCTTCAACTCCAAATCCGCCTGCTGTGTTGTCTACTTCATCTATCCTGTCGGGTCCCACTCCTGTTCGAGGTGCCTTGGACAACGCTAGTGCCACTGTTTCATCACCCATCAGTATTTCGAATTCTGTCAAGGAGGAAGAGATTCCAAGCTTCCCTGGTCGTAAATCATCTCCAGCTCTCGCTGAAACTGGACTGAGGGGTATTGGTAGAGGCTCACTAACCAACCAATTGTCAACATCTGTCCCTCTTAGTTCTGGAAGTACAATTCCCAGTAATGGAGCCCTTGGTGCCGTTCCTTCTGCATCTGAAGTAGCGAAAAGAAATATATTAGGAGCTGACGAGAGACTCGGGAGTAGCGGGGTGGTGCAGCCTCCTCTAGTTTCTCCGCTAAGTAATAGAATGATCTTATCACAGGCTGTCAAGGGTAATGACGGAATTAGCTCGGCTGACAGTGGCAATGTTGGTGATGGTGCAGCTATGGGTGGCAGAGTTTTTTCCCCATCTGCAGTTCCGGGGATACAATGGAGGCCTGGAAGTTCCTTTCAGAATCAAAATGAAGCGGGGCAGTTTCGTGGAAGAACTGAAATTGCACCAGATCTTAGGGAGAAGTTTTTGCAGAAATTACAGCAGGTGCAGCAACAGGGTGGCCAGAGTCCCCTTCTTGGGATGCCCCCTCTTGCTGGTGGAAGTCATAAGCATTTCTCTGCACAACAACAGAACCCCCTCTTACAGCAGTTCAATTCTCAAAGTTCAGCTGGATCTCCTCAAGTTGGACTGGGAGCTGGGGTGCAGTCATCGGGTCAGAACACTATCACATCTGCCTCCTTACAGCAGCAGCCAAATTCAATTCAACAACAGTCTTCTCAGCAAGCACTGCTATCAACTGGCCCTAAAGACACTGAAGTTGGTCATATGAAAGTTGAGGAGTTGCAGCAACAACAAACCATGTCTGATGACTTAGCTACTGAATCTCCTTCCAATGCTGGGCTTGGCAAGAATCCCATAAATGATGATGATATAAAAGCTTCATATGCTTTAGATACGCCTGCAGGAGTATCTGGCTCTTTGACAGAGCCTGCACAACAAGGGCCAAGGGATATTGATCTCTCTCCTGGGCAACCTTTACAATCAAACCAAGCTTCTGGAAGCCTTGGTGTAATTGGACGGAGAAGTGTATCTGACCTTGGTACCATTGGCGATAGCCTTACTCAATCATCTTTGAACTCTGGAGGAATGCATGATCAATTGCACAATCTGCAGATGCTGGAAGCTGCTTATTACAAACTTCCTCAACCCAAAGACTCTGAGCGTGCAAAGAGCTATACTCCAAGGCACCCAGCAGTGACCCCTTCAAGCTATCCTCAAGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGACTTGGAGCTGATAATTTTGGCACTGATACCTTATTCTTTGCCTTTTACTATCAGCAGAACACCTATCAGCAATATTTGGCTGCAAAAGAGTTGAAAAAGCAATCGTGGAGATACCATAAAAAATATAACACATGGTTTCAACGACACGAGGAGCCAAAGGTTGCCACTGATGATTATGAACAGGGGACATACGTGTACTTTGATTTCCATATTGGCAATGACGAGTTACAACATGGATGTTCTTGTGGTTTAAGAGTTGAAGGTCTTGGTGTGAACTGGGGAACCATTGCAATCCACAGGTTGGATCCAAAAATAGTGGTGCAGATGTTAAAAGACAATGAAATTAAAAAGGTGAAGCTATTTGATGCTGATCAAACTAGTATGGATGCTCTGTCTGGATCTGATATTGAAGTAATGGTGGGGATTCCAAATGATCAGATTATAGCCATGAACAACTATAATAGAGCTAAGGAGTGGGTCCAAAGAAATGTTACTCGTTACACTGTCAATGGAGGTGTTAACATCAAATATGTAGCAGTTGGTAATGAGCCATTCCTCAAGGCCTATAATGACTCATTTCTCCACACAACTTTCCCAGCCCTTCAAAACATCCAAAATGCCCTAAATGAAGCTGGGGTAGGTGACTCTATTAAGGCCACCGTGCCCTTAAATGCCGACGTATACGGGTCGCCGACAAGCGATCCCGTCCCCTCCGCCGGCAGGTTCCGGTCAGACATCCTAGGTGAAATGACCCAAATTGTCCAATTCCTGGCCCAAAACAAAGCCCCGTTCACGGTCAACATTTACCCTTTCCTTAGTCTCTATGGAAATGACGCTTTCCCTATTGATTATGCCTTTTTCGACGGTGGAAATACTCCGGTTATCGATAATAATATCCAATACCAAAATGTTTTTGATGCAAATTTCGATACTTTAGTATCGTCCCTAAGGGCGGCTGGATATGGGGACATGCCAATTATTGTAGGGGAGGTGGGGTGGCCCACAGACGGGGATAAAAATGCCAATAAGAACTTGGCGTATAGGTTCTACAAGGGATTTTTACCCAAACTAGCTTCTAATAAGGGAACTCCACTTCGCCCAGGGTATATAGAAGTATACATTTTTGGTCTCATTGACGAGGACGCCAAGAGTGTGGACCCTGGTAACTTCGAGCGCCATTGGGGGATTTTTAGGTACGACGGTCAACCCAAGTACCCGATGGACTTTTCCGGTCGAAACAAAAACAAGTTCCTTGTTCCCGCGAAAAATGTTCAATATTTGCCTAGACAATGGTGCTTGTTTAATCCAAATGCTGGCAACTTGAGCAAACTCGTGGATAATATTAACTATGCGTGTTCAATGGCCGATTGTACCACGCTCGGGTACGGTTCCTCGTGCAATGGCTTGGATGCTAATGGAAATGCATCTTATGCATTTAACGCGTATTTTCAGGCGCAAAATCAGGCGAATTTGAGCTGTAATTTTGAAGGGTTGGCCATGGTGTCTACACAAAATATGTCACAAGGGGATTGCAGTTTTTTGATTCAAATGGGGATTGATTCTTCTTCTGCTTGTTTAGGGAGCTCACTAGTGACTCTGCTACTTTTTGTTGTACTTGTATTTGTGTTATTGTAG

Network for GWHGAAZE006986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04065.16	Not3	4	131	1.20E-57
PF04065.16	Not3	158	255	2.50E-19
PF04153.19	NOT2_3_5	770	883	3.20E-35
PF00332.19	Glyco_hydro_17	902	1222	8.00E-65
PF07983.14	X8	1243	1313	3.50E-16

Protein Sequence

>GWHPAAZE006990
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALMDARKQIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVDVFLDMLSAIDDLQLLSRFHGAFIGPVSELENQIDSFEAEMEGLSVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFDDVDELYSSLPLDKVELEDLVTVGPPGLVKGVSATSAVLSMKTSLTSSPAQPPVTSALDQVEDTVSQDSNSEAIARTPPKSSSVVSTPTTPAGTHATTGTINASTPNPPAVLSTSSILSGPTPVRGALDNASATVSSPISISNSVKEEEIPSFPGRKSSPALAETGLRGIGRGSLTNQLSTSVPLSSGSTIPSNGALGAVPSASEVAKRNILGADERLGSSGVVQPPLVSPLSNRMILSQAVKGNDGISSADSGNVGDGAAMGGRVFSPSAVPGIQWRPGSSFQNQNEAGQFRGRTEIAPDLREKFLQKLQQVQQQGGQSPLLGMPPLAGGSHKHFSAQQQNPLLQQFNSQSSAGSPQVGLGAGVQSSGQNTITSASLQQQPNSIQQQSSQQALLSTGPKDTEVGHMKVEELQQQQTMSDDLATESPSNAGLGKNPINDDDIKASYALDTPAGVSGSLTEPAQQGPRDIDLSPGQPLQSNQASGSLGVIGRRSVSDLGTIGDSLTQSSLNSGGMHDQLHNLQMLEAAYYKLPQPKDSERAKSYTPRHPAVTPSSYPQVQAPIVNNPAFWERLGADNFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPKVATDDYEQGTYVYFDFHIGNDELQHGCSCGLRVEGLGVNWGTIAIHRLDPKIVVQMLKDNEIKKVKLFDADQTSMDALSGSDIEVMVGIPNDQIIAMNNYNRAKEWVQRNVTRYTVNGGVNIKYVAVGNEPFLKAYNDSFLHTTFPALQNIQNALNEAGVGDSIKATVPLNADVYGSPTSDPVPSAGRFRSDILGEMTQIVQFLAQNKAPFTVNIYPFLSLYGNDAFPIDYAFFDGGNTPVIDNNIQYQNVFDANFDTLVSSLRAAGYGDMPIIVGEVGWPTDGDKNANKNLAYRFYKGFLPKLASNKGTPLRPGYIEVYIFGLIDEDAKSVDPGNFERHWGIFRYDGQPKYPMDFSGRNKNKFLVPAKNVQYLPRQWCLFNPNAGNLSKLVDNINYACSMADCTTLGYGSSCNGLDANGNASYAFNAYFQAQNQANLSCNFEGLAMVSTQNMSQGDCSFLIQMGIDSSSACLGSSLVTLLLFVVLVFVLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12580	CNOT3, NOT3	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.200
	SRR3591706	second leaf	31.878
	SRR3591707	mature leaf	31.997
	SRR3591708	Shoot apex	40.007
	SRR3591709	Stem	50.211
	SRR3591710	White floral bud	61.964
	SRR3591711	White flower	70.979
	SRR3591712	Green floral bud	49.000
	SRR3591713	Yellow flower	54.053
SRP173429	SRR8316895	Juvenile bud stage	29.073
	SRR8316896	Juvenile bud stage	40.530
	SRR8316897	Juvenile bud stage	18.120
	SRR8316894	Third green stage	15.742
	SRR8316900	Third green stage	40.249
	SRR8316901	Third green stage	39.071
	SRR8316898	Complete white stage	23.356
	SRR8316899	Complete white stage	52.431
	SRR8316903	Complete white stage	43.279
	SRR8316902	Silver flowering stage	25.447
	SRR8316904	Silver flowering stage	36.818
	SRR8316905	Silver flowering stage	17.454
	SRR8316906	Gold flowering stage	49.914
	SRR8316907	Gold flowering stage	49.857
	SRR8316908	Gold flowering stage	58.086
SRP132670	SRR6706286	Control	43.366
	SRR6706287	Light intensity 50%	43.647
	SRR6706288	Light intensity 20%	43.999
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.168
	CNS0095593	Slightly white alabastrum(diploid) 2	28.777
	CNS0095594	Slightly white alabastrum(diploid) 3	24.367
	CNS0095595	Whole white alabastrum(diploid) 2	25.717
	CNS0095596	Whole white alabastrum(diploid) 3	18.394
	CNS0095597	Whole white alabastrum(diploid) 4	25.191
	CNS0095598	Silvery flower (diploied) 1	41.705
	CNS0095599	Silvery flower (diploied) 2	34.114
	CNS0095600	Silvery flower (diploied) 3	59.229
	CNS0095601	Golden flower (diploid) 1	33.827
	CNS0095602	Golden flower (diploid) 2	57.146
	CNS0095603	Golden flower (diploid) 3	55.051
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.719
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.083
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.452
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.950
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.768
	CNS0095610	Silvery flower (diploied) 1	52.195
	CNS0095611	Silvery flower (diploied) 2	55.009
	CNS0095612	Silvery flower (diploied) 3	63.117
	CNS0095613	Golden flower (tetraploid) 1	36.036
	CNS0095614	Golden flower (tetraploid) 2	49.319
	CNS0095615	Golden flower (tetraploid) 3	57.028
CRA001975	CRR073297	Stem 1	51.341
	CRR073298	Stem 2	45.712
	CRR073299	Stem 3	49.135
	CRR073300	Leaf 1	50.126
	CRR073301	Leaf 2	46.872
	CRR073302	Leaf 3	39.154
	CRR073303	Juvenile bud 1	41.970
	CRR073304	Juvenile bud 2	47.759
	CRR073305	Juvenile bud 3	58.628
	CRR073306	Third green 1	32.427
	CRR073307	Third green 2	29.480
	CRR073308	Third green 3	34.541
	CRR073309	Second white 1	37.034
	CRR073310	Second white 2	36.082
	CRR073311	Second white 3	42.434
	CRR073312	Silver flowering 1	41.207
	CRR073313	Silver flowering 2	46.382
	CRR073314	Silver flowering 3	45.683
	CRR073315	Gold flowering 1	32.301
	CRR073316	Gold flowering 2	44.773
	CRR073317	Gold flowering 3	26.925
	CRR073318	Tawny withering 1	44.583
	CRR073319	Tawny withering 2	43.137
	CRR073320	Tawny withering 3	48.161