Gene detail

Detail information of GWHGAAZE007207

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010043341.1	0	PREDICTED: violaxanthin de-epoxidase, chloroplastic [Eucalyptus grandis]
Swissprot	tr\|Q9SM43\|VDE_SPIOL	0	Violaxanthin de-epoxidase, chloroplastic (Precursor)
trEMBL	tr\|A0A059D3P0\|A0A059D3P0_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW85348.1}
TAIR10	AT1G08550.2	6E-152	non-photochemical quenching 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40535042	40539275	+
GWHAAZE00000002	mRNA	40535042	40539275	+
GWHAAZE00000002	exon	40535042	40535091	+
GWHAAZE00000002	exon	40535459	40535599	+
GWHAAZE00000002	exon	40536648	40536744	+
GWHAAZE00000002	exon	40537389	40537780	+
GWHAAZE00000002	exon	40538828	40539275	+
GWHAAZE00000002	CDS	40535042	40535091	+
GWHAAZE00000002	CDS	40535459	40535599	+
GWHAAZE00000002	CDS	40536648	40536744	+
GWHAAZE00000002	CDS	40537389	40537780	+
GWHAAZE00000002	CDS	40538828	40539275	+

Transcript Sequence
>GWHTAAZE007215 ATGGAAGGGAGAAGATTTCTTCAGTCTGTAGTCTTAATACAAATACTGAGGATAGTAACATGCATACTACGGAGGCAATGGAGCCAATTCATAACAGTAGCTCTCATACTGTCAGGCATATTCTTTGTTATTCCAACAGCTGATGCAGTAGATGCCCTCAAAACTTGTTCTTGCTTACTGAAGGAGTGCAGGGTGGAACTTGCAAAGTGCATTGCGAACCCATCGTGTGCAGCTAATGTGGCTTGTCTCCAAACCTGCAACAATAGACCTGATGAGACTGAGTGCCAGATAAAATGTGGGGATTTGTTTGAGAACAGCGTTGTAGACCAGTTCAACGAGTGTGCAGTCTCACGAAAGAAATGCGTGCCCCAAAAATCAGACGTGGGTGAATTTCCGGTACCTGCTCCTGATTTGCTAGTTAAAAGCTTCAACATCAACGATTTCACTGGGAAGTGGTATATAACTAGCGGCTTAAATCCTACATTTGACGCCTTTGATTGCCAATTGCATGAGTTCCATATGGAATCAAACAAACTTGTTGGGAATTTGACGTGGCGAATTCGGACCCCAGATGGTGGATTCTTTACTCGATCAGCTGTTCAGAAATTTGTACAAGATCCGACCCAACCCGGCATTCTGTACAATCACAATAACGAGTTTCTTCACTACGAAGATGACTGGAACGATGCATGGGATGGATATGGTGGCTCAGTTATATACACAAGAAGTTCAGTTCTGCCGGAAAACGTTGTGCCCGAATTAGAAAGGGCAGCTCAAAGTGTAGGGCGCAACTTCAAAGACTATATCAGAACGGACAACACTTGTGGGCCCGAGCCTCCCCTCATAGATAGACTGGAGAAGACAGCGGAAGAAGGAGAGAAAACAATCATAAGAGAGGTCGTGCAGATTGAGGAAGAGGTTGAGAAGGAGGTTGAGAAGGTGGAGTCCACTGAGAGGAGCTTGTTCCAGCGGCTAGCAGAAGGGTTTGAAGAGCTCAAAAAGGATGAAGAAAATTTCATCAGGGAGCTGAGTAAAGAAGAGATGGATGTTTTGAGTGAGCTTAAAATGGAAGCTGGAGAACTGGAAAGGCTCTTTGGAAGAGCATTGCCATTGAGGAAGTTGAGATAA

Network for GWHGAAZE007207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07137.12	VDE	55	273	3.60E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09839	VDE, NPQ1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009507	cellular_component	chloroplast
GO:0046422	molecular_function	violaxanthin de-epoxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.761
	SRR3591706	second leaf	42.897
	SRR3591707	mature leaf	36.934
	SRR3591708	Shoot apex	22.629
	SRR3591709	Stem	14.877
	SRR3591710	White floral bud	5.491
	SRR3591711	White flower	10.510
	SRR3591712	Green floral bud	4.097
	SRR3591713	Yellow flower	5.352
SRP173429	SRR8316895	Juvenile bud stage	8.378
	SRR8316896	Juvenile bud stage	10.577
	SRR8316897	Juvenile bud stage	5.304
	SRR8316894	Third green stage	5.173
	SRR8316900	Third green stage	18.431
	SRR8316901	Third green stage	15.916
	SRR8316898	Complete white stage	7.920
	SRR8316899	Complete white stage	24.224
	SRR8316903	Complete white stage	11.613
	SRR8316902	Silver flowering stage	4.723
	SRR8316904	Silver flowering stage	7.652
	SRR8316905	Silver flowering stage	3.206
	SRR8316906	Gold flowering stage	4.344
	SRR8316907	Gold flowering stage	3.196
	SRR8316908	Gold flowering stage	6.323
SRP132670	SRR6706286	Control	27.335
	SRR6706287	Light intensity 50%	20.476
	SRR6706288	Light intensity 20%	21.072
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.803
	CNS0095593	Slightly white alabastrum(diploid) 2	10.704
	CNS0095594	Slightly white alabastrum(diploid) 3	5.060
	CNS0095595	Whole white alabastrum(diploid) 2	8.748
	CNS0095596	Whole white alabastrum(diploid) 3	5.878
	CNS0095597	Whole white alabastrum(diploid) 4	6.053
	CNS0095598	Silvery flower (diploied) 1	15.259
	CNS0095599	Silvery flower (diploied) 2	16.090
	CNS0095600	Silvery flower (diploied) 3	20.790
	CNS0095601	Golden flower (diploid) 1	15.083
	CNS0095602	Golden flower (diploid) 2	15.215
	CNS0095603	Golden flower (diploid) 3	16.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.569
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.077
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.768
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.081
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.288
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.634
	CNS0095610	Silvery flower (diploied) 1	30.762
	CNS0095611	Silvery flower (diploied) 2	31.180
	CNS0095612	Silvery flower (diploied) 3	4.806
	CNS0095613	Golden flower (tetraploid) 1	10.638
	CNS0095614	Golden flower (tetraploid) 2	19.319
	CNS0095615	Golden flower (tetraploid) 3	4.107
CRA001975	CRR073297	Stem 1	25.459
	CRR073298	Stem 2	20.154
	CRR073299	Stem 3	18.786
	CRR073300	Leaf 1	22.935
	CRR073301	Leaf 2	23.305
	CRR073302	Leaf 3	19.395
	CRR073303	Juvenile bud 1	25.358
	CRR073304	Juvenile bud 2	16.076
	CRR073305	Juvenile bud 3	21.155
	CRR073306	Third green 1	3.485
	CRR073307	Third green 2	2.039
	CRR073308	Third green 3	3.280
	CRR073309	Second white 1	1.947
	CRR073310	Second white 2	2.776
	CRR073311	Second white 3	1.401
	CRR073312	Silver flowering 1	0.845
	CRR073313	Silver flowering 2	0.745
	CRR073314	Silver flowering 3	1.814
	CRR073315	Gold flowering 1	64.320
	CRR073316	Gold flowering 2	84.688
	CRR073317	Gold flowering 3	47.970
	CRR073318	Tawny withering 1	13.568
	CRR073319	Tawny withering 2	16.869
	CRR073320	Tawny withering 3	16.073