Gene detail

Detail information of GWHGAAZE007298

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010106893.1	4.8927E-123	Squalene monooxygenase [Morus notabilis]
Swissprot	tr\|O81000\|ERG15_ARATH	8E-121	Squalene epoxidase 2, mitochondrial (Precursor)
trEMBL	tr\|M1A297\|M1A297_SOLTU	2E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400013082}
TAIR10	AT4G37760.1	4E-97	squalene epoxidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	42372118	42378902	+
GWHAAZE00000002	mRNA	42372118	42378902	+
GWHAAZE00000002	exon	42372118	42372146	+
GWHAAZE00000002	exon	42374225	42374444	+
GWHAAZE00000002	exon	42374597	42374708	+
GWHAAZE00000002	exon	42376847	42376919	+
GWHAAZE00000002	exon	42377034	42377202	+
GWHAAZE00000002	exon	42377349	42377567	+
GWHAAZE00000002	exon	42378434	42378712	+
GWHAAZE00000002	exon	42378798	42378902	+
GWHAAZE00000002	CDS	42372118	42372146	+
GWHAAZE00000002	CDS	42374225	42374444	+
GWHAAZE00000002	CDS	42374597	42374708	+
GWHAAZE00000002	CDS	42376847	42376919	+
GWHAAZE00000002	CDS	42377034	42377202	+
GWHAAZE00000002	CDS	42377349	42377567	+
GWHAAZE00000002	CDS	42378434	42378712	+
GWHAAZE00000002	CDS	42378798	42378902	+

Transcript Sequence
>GWHTAAZE007306 ATGTACAAGTATGACGACTGTAAGGGTTGTTTCTTTGCCTCACTGTTAGCTTCTATTTTTCTCTGCATTTTGCGCCATCATAACGCCATCAAATCCAACAAAAAACACCAATATAACAATCCACTTACTAGTTCGACCAAGACCCGGCCCAACTACTCTGAAACCCAACCCGTTACTGCCTCCGACTCTGACGTCATCATTGTCGGAGCAGGTGTTGCCGGTGCCGCCCTCGCTCACACTCTTGGCAAGGAAGGGCGACGAGTTCATGTGATTGAAAGAGACTTAACGGAGCCTGACAGAATTGTTGGTGAATTGCTACAACCAGGGGGTTACCTTAAATTAATCGAGTTGGGCCTTGAAGATGTGGCTGGGAGGAGCTTCCACAATGGCCGCTTCATACAGAGGATGAGAGAAAAAGCTGCTGCTCTTCCCAATGTTTGCCTAGAGCAAGGAACTGTAATATCCCTGCTCGAAGAGAACGGAACCATAAAGGGTGTTCAGTATAAAACTAAAACAGACCAAGAACTCAAGGGATACGCTCCTCTGACAATTGTGTGTGATGGATGCTTCTCAAACTTGCGTCGCTCTCTTTGCAAACCTCAGGTGGATGTGCCTTCTTGCTTTGTCAGTTTAATCTTGGAGAATATTGAACTTCCATTTCCCAACCATGGGCACGTCGTTCTAGCAGATCCTTCACCAATCTTATTTTATCCAATTAGTAGCAATGAAGTTCGTTGTTTGGTTGATGTACCTGGTCAAAAGCTTCCTTCTGTCGCTAATGGTGAGATGACCACCTATTTGAAGACCATGGTAGCTCCCCAGCCGGTGGCATCTACTATAAATACCTTGGCCGGGGCCTTATACAAAGTGTTTTGTGCTTCACCCGATCAAGCAAGTAAGGAAATGCGTGAAGAGTGTTTTGACTATTTGAGCCTCGGTGGTGTTTGCGCAACCGGACCAGTAGCTCTACTCTCCGGTCTAAACCCTAGGCCTCTTAGCTTAGTTCTCCATTTCTTTGCTGTGGGTATATATGGTGTTGGGCTTCTATTACTACCTTTCCCTTCACCTAAATGCTTTTGGATTGGAGCTAGATTGATTTCGGGTGCATCCGGCATAATTTTCCCAATCATAAAAGCCGAAGGAGTAAGGCAAATGTTCTTCCCTGCAACTGTTCCAGCATATTATAGAGCTCCCCGGGCTAAATGA

Network for GWHGAAZE007298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01494.20	FAD_binding_3	63	110	1.40E-05
PF08491.11	SE	180	274	3.40E-37
PF08491.11	SE	275	355	7.80E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00511	SQLE, ERG1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100
		Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016021	cellular_component	integral component of membrane
GO:0071949	molecular_function	FAD binding
GO:0004506	molecular_function	squalene monooxygenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.064
	SRR3591712	Green floral bud	0.045
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.016
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.117
	SRR8316901	Third green stage	0.025
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.043
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.010
	SRR6706287	Light intensity 50%	0.056
	SRR6706288	Light intensity 20%	0.065
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.104
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.065
	CNS0095597	Whole white alabastrum(diploid) 4	0.309
	CNS0095598	Silvery flower (diploied) 1	0.081
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.214
	CNS0095601	Golden flower (diploid) 1	0.038
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.025
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.276
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.051
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.051
	CNS0095613	Golden flower (tetraploid) 1	0.075
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.030
	CRR073298	Stem 2	0.049
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.158
	CRR073303	Juvenile bud 1	0.096
	CRR073304	Juvenile bud 2	0.329
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.079
	CRR073317	Gold flowering 3	0.208
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.125
	CRR073320	Tawny withering 3	0.007