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Detail information of GWHGAAZE007326
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_006338021.1
9.26019E-62
PREDICTED: MADS-box transcription factor 27-like isoform X2 [Solanum tuberosum]
Swissprot
tr|Q9SZJ6|AGL21_ARATH
3E-45
Agamous-like MADS-box protein AGL21
trEMBL
tr|D7T5C5|D7T5C5_VITVI
8E-60
Putative uncharacterized protein {ECO:0000313|EMBL:CBI25708.3}
TAIR10
AT4G37940.1
2E-37
AGAMOUS-like 21
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
43017346
43022734
-
GWHAAZE00000002
mRNA
43017346
43022734
-
GWHAAZE00000002
exon
43022553
43022734
-
GWHAAZE00000002
exon
43019110
43019188
-
GWHAAZE00000002
exon
43017728
43017769
-
GWHAAZE00000002
exon
43017606
43017647
-
GWHAAZE00000002
exon
43017346
43017501
-
GWHAAZE00000002
CDS
43022553
43022734
-
GWHAAZE00000002
CDS
43019110
43019188
-
GWHAAZE00000002
CDS
43017728
43017769
-
GWHAAZE00000002
CDS
43017606
43017647
-
GWHAAZE00000002
CDS
43017346
43017501
-
Transcript Sequence
>GWHTAAZE007334 ATGGGGAGAGGAAAGATTGAGATCCGAAGGATTGATAACTCAACGAGCAGGCAAGTGACTTTTTCGAAGAGGAGGAGCGGGCTTTTGAAGAAGGCAAAGGAACTCGCAATTTTATGCGATGCTGAAGTTGGAGTTATAATCTTCTCTAGCACTGGCAAGCTCTATGAATGTTCAAGCACCAGCATGAAAGCAGTGATCGAAAGATACAATAAATCAAAAGAAGAAAATCATCAACTGCTGAATCCACTCTCAGAAGTTAAGGAAACAATATTAACAAATGAGATACAAGAGCTGAGCATAAAGGGGAGCCTTCTTCATCAAAAAAATGTTGAACTATATAAGAAGGTTTATGGAACAAGAGATGCAAATGAGAGTGCGTACATTACGTATGGTTATACTAATGGCGAGGATATGTGTGTTCCATTTCATCTTCAGCTAAGCCAGCCCGATCCATTAAGTTCTGATCAAGCACCAGCAGGAGCTAGCAAATCAAGAAATTGA
Network for GWHGAAZE007326
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00319.19
SRF-TF
10
56
1.90E-24
Protein Sequence
>GWHPAAZE007330 MGRGKIEIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYECSSTSMKAVIERYNKSKEENHQLLNPLSEVKETILTNEIQELSIKGSLLHQKNVELYKKVYGTRDANESAYITYGYTNGEDMCVPFHLQLSQPDPLSSDQAPAGASKSRN
Gene family
Gene family
subfamily
Transcription Factors Family
MADS-M-type
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0045944
biological_process
positive regulation of transcription by RNA polymerase II
GO:0003677
molecular_function
DNA binding
GO:0046983
molecular_function
protein dimerization activity
GO:0000977
molecular_function
RNA polymerase II transcription regulatory region sequence-specific DNA binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
0.000
SRR3591706
second leaf
0.000
SRR3591707
mature leaf
0.000
SRR3591708
Shoot apex
0.000
SRR3591709
Stem
0.049
SRR3591710
White floral bud
0.000
SRR3591711
White flower
0.000
SRR3591712
Green floral bud
0.000
SRR3591713
Yellow flower
0.000
SRP173429
SRR8316895
Juvenile bud stage
0.000
SRR8316896
Juvenile bud stage
0.000
SRR8316897
Juvenile bud stage
0.000
SRR8316894
Third green stage
0.000
SRR8316900
Third green stage
0.000
SRR8316901
Third green stage
0.036
SRR8316898
Complete white stage
0.000
SRR8316899
Complete white stage
0.000
SRR8316903
Complete white stage
0.008
SRR8316902
Silver flowering stage
0.000
SRR8316904
Silver flowering stage
0.000
SRR8316905
Silver flowering stage
0.000
SRR8316906
Gold flowering stage
0.000
SRR8316907
Gold flowering stage
0.000
SRR8316908
Gold flowering stage
0.000
SRP132670
SRR6706286
Control
0.000
SRR6706287
Light intensity 50%
0.000
SRR6706288
Light intensity 20%
0.000
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
0.000
CNS0095593
Slightly white alabastrum(diploid) 2
0.000
CNS0095594
Slightly white alabastrum(diploid) 3
0.000
CNS0095595
Whole white alabastrum(diploid) 2
0.000
CNS0095596
Whole white alabastrum(diploid) 3
0.000
CNS0095597
Whole white alabastrum(diploid) 4
0.000
CNS0095598
Silvery flower (diploied) 1
0.000
CNS0095599
Silvery flower (diploied) 2
0.000
CNS0095600
Silvery flower (diploied) 3
0.000
CNS0095601
Golden flower (diploid) 1
0.000
CNS0095602
Golden flower (diploid) 2
0.000
CNS0095603
Golden flower (diploid) 3
0.000
CNS0095604
Slightly white alabastrum(tetraploid) 1
0.000
CNS0095605
Slightly white alabastrum(tetraploid) 2
0.000
CNS0095606
Slightly white alabastrum(tetraploid) 3
0.000
CNS0095607
Whole white alabastrum(tetraploid) 1
0.000
CNS0095608
Whole white alabastrum(tetraploid) 2
0.000
CNS0095609
Whole white alabastrum(tetraploid) 3
0.000
CNS0095610
Silvery flower (diploied) 1
0.000
CNS0095611
Silvery flower (diploied) 2
0.000
CNS0095612
Silvery flower (diploied) 3
0.000
CNS0095613
Golden flower (tetraploid) 1
0.000
CNS0095614
Golden flower (tetraploid) 2
0.000
CNS0095615
Golden flower (tetraploid) 3
0.000
CRA001975
CRR073297
Stem 1
0.000
CRR073298
Stem 2
0.000
CRR073299
Stem 3
0.000
CRR073300
Leaf 1
0.000
CRR073301
Leaf 2
0.000
CRR073302
Leaf 3
0.000
CRR073303
Juvenile bud 1
0.000
CRR073304
Juvenile bud 2
0.000
CRR073305
Juvenile bud 3
0.000
CRR073306
Third green 1
0.000
CRR073307
Third green 2
0.000
CRR073308
Third green 3
0.000
CRR073309
Second white 1
0.000
CRR073310
Second white 2
0.000
CRR073311
Second white 3
0.000
CRR073312
Silver flowering 1
0.000
CRR073313
Silver flowering 2
0.000
CRR073314
Silver flowering 3
0.000
CRR073315
Gold flowering 1
0.004
CRR073316
Gold flowering 2
0.001
CRR073317
Gold flowering 3
0.000
CRR073318
Tawny withering 1
0.000
CRR073319
Tawny withering 2
0.000
CRR073320
Tawny withering 3
0.000