Gene detail

Detail information of GWHGAAZE007341

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271823.2	PREDICTED: protease Do-like 7 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8RY22\|DEGP7_ARATH	Protease Do-like 7
trEMBL	tr\|F6HSL4\|F6HSL4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57654.1}
TAIR10	AT3G03380.1	DegP protease 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	43533107	43549391	+
GWHAAZE00000002	mRNA	43533107	43549391	+
GWHAAZE00000002	exon	43533107	43533165	+
GWHAAZE00000002	exon	43533602	43533701	+
GWHAAZE00000002	exon	43534339	43534397	+
GWHAAZE00000002	exon	43536077	43536113	+
GWHAAZE00000002	exon	43536397	43536522	+
GWHAAZE00000002	exon	43537165	43537254	+
GWHAAZE00000002	exon	43537858	43537923	+
GWHAAZE00000002	exon	43538033	43538089	+
GWHAAZE00000002	exon	43538186	43538255	+
GWHAAZE00000002	exon	43539644	43539698	+
GWHAAZE00000002	exon	43539963	43540083	+
GWHAAZE00000002	exon	43540192	43540272	+
GWHAAZE00000002	exon	43542638	43542687	+
GWHAAZE00000002	exon	43542891	43543056	+
GWHAAZE00000002	exon	43543591	43544010	+
GWHAAZE00000002	exon	43544299	43544481	+
GWHAAZE00000002	exon	43544561	43544666	+
GWHAAZE00000002	exon	43544909	43545079	+
GWHAAZE00000002	exon	43545412	43545491	+
GWHAAZE00000002	exon	43545574	43545801	+
GWHAAZE00000002	exon	43546170	43546385	+
GWHAAZE00000002	exon	43546614	43546771	+
GWHAAZE00000002	exon	43547046	43547157	+
GWHAAZE00000002	exon	43549305	43549391	+
GWHAAZE00000002	CDS	43533107	43533165	+
GWHAAZE00000002	CDS	43533602	43533701	+
GWHAAZE00000002	CDS	43534339	43534397	+
GWHAAZE00000002	CDS	43536077	43536113	+
GWHAAZE00000002	CDS	43536397	43536522	+
GWHAAZE00000002	CDS	43537165	43537254	+
GWHAAZE00000002	CDS	43537858	43537923	+
GWHAAZE00000002	CDS	43538033	43538089	+
GWHAAZE00000002	CDS	43538186	43538255	+
GWHAAZE00000002	CDS	43539644	43539698	+
GWHAAZE00000002	CDS	43539963	43540083	+
GWHAAZE00000002	CDS	43540192	43540272	+
GWHAAZE00000002	CDS	43542638	43542687	+
GWHAAZE00000002	CDS	43542891	43543056	+
GWHAAZE00000002	CDS	43543591	43544010	+
GWHAAZE00000002	CDS	43544299	43544481	+
GWHAAZE00000002	CDS	43544561	43544666	+
GWHAAZE00000002	CDS	43544909	43545079	+
GWHAAZE00000002	CDS	43545412	43545491	+
GWHAAZE00000002	CDS	43545574	43545801	+
GWHAAZE00000002	CDS	43546170	43546385	+
GWHAAZE00000002	CDS	43546614	43546771	+
GWHAAZE00000002	CDS	43547046	43547157	+
GWHAAZE00000002	CDS	43549305	43549391	+

Transcript Sequence
>GWHTAAZE007349 ATGATTCCATCCTTTATAGGGGCAAGGTTGAATGCGATGATAGCAGCCATAATCTCAGCTGCAATACAATTTTTGAGCTATGAGGGGATTCCGCTTGCTCCTGAAGCTGCTTGTGTTGGACTTGAAATTAGGGTGGTTGGTAATGATAGTGGAGAGAAGGTCTCGATTTTGGCTGGTACACTTGCTCGTTTAGATCGAGATGCTCCTCACTATAAAAAGGATGGCTACAATGACTTCAATACTTTCTACATGCAAGCTGCTTCTGGAACTAAAGGCGGTTCAAGTGGTTCCCCAGTAATTGATTGGCAAGGCAGGGCAGTTGCCTTAAATGCTGGGAGCAAGTCTTCCAGTGCTTCTGCATTTTTCTTGCCTTTAGAGCGAGTTGTTAGGGCTTTGAATATATTGCAAGAGGGCAGAGATTCTTTCAAAAATAAATGGGAGGCAGTTACCATTCCTCGTGGTACGCTTCAGGCGACATTTCTACACAAAGGATTTGACGAGACACGTCGGCTCGGTCTCCGGAGCGAAACAGAACAGTTGGTCCGTCATGCATCTCCACTTGGTGAAACTGGAATGCTTGTTGTTGACTCTGTGGTGCCTGGTGGCCCAGCTCATAACCATTTAGAGCCGGGTGATGTGCTTGTTCGCATGAATGGGGAGGCAAACCGGATAAGTGATAACACAATACCAGCCCTCAAGGTGGGATTGTGGGTTAAAAGAATCTTGATGCAGGTGCTTACCCAGTTCCTGAAGATGGAGATTTTACTTGATGGCAGTGTGGGCCAAAATGTTGAACTACAGATTGAAAGGGGTGGCACTCCAATAAATGTTAACTTGATGGTTCAAGATTTACACTCAATAACACCTGATCACTTCTTGGAAGTCAGCGGTGCCGTGATACACCCTCTTTCTTATCAGCAGGCTAGAAATTTCCGATTCCACTGTGGTCTTGTTTATGTATCAGAACCAGGATATATGCTCTTTAGAGCCGGAGTTCCGCGCCATGCCATCATTAAGAAATTTGCAGGTGAAGAGATATTGCGGCTTGAAGACCTGATCTCTGTTTTATCTAAGGTTTCAAGGCGAGCAAGAGTACCGTTAGAATATATAAGCTACACTGATCGTCATCGAAGGAAGTCTGTCCTAGTTACCATTGATGGTCATGAATGGTACGCGCCTCCTCAGATATACACTCGTGATGCCTGCTCTGGTTTATGGACAGCAAAGCCGGCTTTGCCATCTGATTCTCCCCTATCTGGTGTGAATCATGATCAGCAAATTCTGCCAAACCATCAAATATCGTCCAGTACTGATGAGCCTAGTCTAGCGAAAAACATACGACAAGATATTATCCAAAATTCAGCTCACAGTAACAACGGCGTTACCAGTATGGAAATTGGTAAAGAACATGTTGCTGATGAATCTGATGGTGGAACAAAAAAGCGGAGAGTAAAGGAGGATTTATCCGCTGATGGCATGGTTATAGCAGATTATCAAGGTCCAGCAGCTGCTGCAGATAATGCATCACTTGCTGATCGAGTGATAGAACCTACTCTTGTTCATGTGCCATCATCATGTATGCTTGATGGTTGCCACTCACAACACTTTTTCGGGACGGGTGTAATTGTATATCATTCTCAAAACATGGGAATAGCTGCAGTTGACAAGAACACTGTTGCAATATCAGCATCTGATGTGATGCTCTCATTTGCTGCTTTTCCAATTGAAATTCCCGGCGAGGTGATCTTTCTCCATCCTGTTCATAATTATGCACTTGTTGCATATGACCCTTCTGCTCTGGGAGCTGTTGGTGCTTCTGTAGTTCATGCTGCTGAACTTCTTCCTGAGCCGGCACTGCGTCGTGGAGATTCAGTCTATCTTGTGGGATTGAGTAGAAGCCTCCAGGCAACATCCAGGAAGTCTATTGTCACCAACCCTTGTGCTGCTCTTAATATTGGCTCTGCTGATTGTCCACGGTACAGAGCAACCAACATGGAAGTCATCGAGCTTGATACGGATTTTGGTAGTGCATTTTCGGGTGTGCTAGCTGATGAGCATGGAAGGGTTCAAGCTTTGTGGGGAAGCTTTTCAACACAGCTGAAATATGGTGGTAGTTCATCTGAAGATCATCAGTTTGTGAGAGGTATTCCTATATATACAATCAGCCAAGTCCTTGACAAAATCATATCTGGTGCAAATGGGCTGCCTCTTCTCATCAATGGCATCAAAAGACCGATGCCGCTTATAAGGATTTTAGAGGTTGAACTTTATCCTACTTTGCTTTCCAAGGCTCGAAGTTTTGGACTGAGCGACAATTGGATACAGGCTCTTGTGAAGAAAGATCCGGTTCGACGTCAAGTTTTACGGGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAGAAGTTATTAGAACAAGGTGATATGGTGTTGGCAATTAATAAAGTGCCAATTACATGCTTTCGCGATATTGAAGATGCTTGCCAAGCATTAGATCAGTGCGTTGAAAATGACGGAACACTTAAGATGACTATTTTTCGTCAGGGAGGTGAAATAGAACTTGTTGTGGGAACAGATCTAAGGGATGGAAATGGGACAACACGCGTGGTTAATTGGTGTGGATCTATAGTCCAGGATCCTCACCCAGCAGTGCGTGCTCTTGGATTCTTGCCTGAAGAAGGCCACGGTGTTTATGTGGCTAGGTGGTGTCATGGGAGTCCGGTACACAGATATGGTCTATATGCTCTTCAATGGATTGTTGAAGTTAATGGGAAACCTACTCCTGATTTGGATGCTTTTGTTGATGCGACAAAGCGGCTGTGGGCGGTGGTTGACAAGGATATGGGCACTCGTAAGGCGGTGGTGGTGAAAGGTATAGTGTTTGGCCAGGAAGTGTGCTAA

Network for GWHGAAZE007341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0129	GO:0006415 translational termination GOslim:biological_process GO:0006414 translational elongation GOslim:biological_process GO:0005737 cytoplasm GOslim:cellular_component GO:0003747 translation release factor activity GOslim:molecular_function GO:0003746 translation elongation factor activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13365.7	Trypsin_2	26	109	2.90E-06
PF12812.8	PDZ_1	286	359	8.30E-15
PF12812.8	PDZ_1	865	939	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.547
	SRR3591706	second leaf	16.515
	SRR3591707	mature leaf	10.913
	SRR3591708	Shoot apex	24.528
	SRR3591709	Stem	22.525
	SRR3591710	White floral bud	24.382
	SRR3591711	White flower	24.348
	SRR3591712	Green floral bud	20.031
	SRR3591713	Yellow flower	24.181
SRP173429	SRR8316895	Juvenile bud stage	13.152
	SRR8316896	Juvenile bud stage	20.363
	SRR8316897	Juvenile bud stage	9.816
	SRR8316894	Third green stage	8.428
	SRR8316900	Third green stage	21.227
	SRR8316901	Third green stage	19.408
	SRR8316898	Complete white stage	9.258
	SRR8316899	Complete white stage	22.920
	SRR8316903	Complete white stage	19.508
	SRR8316902	Silver flowering stage	10.672
	SRR8316904	Silver flowering stage	16.122
	SRR8316905	Silver flowering stage	6.091
	SRR8316906	Gold flowering stage	22.155
	SRR8316907	Gold flowering stage	21.647
	SRR8316908	Gold flowering stage	25.305
SRP132670	SRR6706286	Control	18.263
	SRR6706287	Light intensity 50%	20.971
	SRR6706288	Light intensity 20%	22.672
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.707
	CNS0095593	Slightly white alabastrum(diploid) 2	12.354
	CNS0095594	Slightly white alabastrum(diploid) 3	10.081
	CNS0095595	Whole white alabastrum(diploid) 2	10.638
	CNS0095596	Whole white alabastrum(diploid) 3	8.761
	CNS0095597	Whole white alabastrum(diploid) 4	9.950
	CNS0095598	Silvery flower (diploied) 1	15.500
	CNS0095599	Silvery flower (diploied) 2	13.501
	CNS0095600	Silvery flower (diploied) 3	23.523
	CNS0095601	Golden flower (diploid) 1	10.702
	CNS0095602	Golden flower (diploid) 2	22.093
	CNS0095603	Golden flower (diploid) 3	21.366
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.022
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.652
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.306
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.677
	CNS0095610	Silvery flower (diploied) 1	26.675
	CNS0095611	Silvery flower (diploied) 2	25.018
	CNS0095612	Silvery flower (diploied) 3	34.500
	CNS0095613	Golden flower (tetraploid) 1	12.960
	CNS0095614	Golden flower (tetraploid) 2	19.799
	CNS0095615	Golden flower (tetraploid) 3	14.361
CRA001975	CRR073297	Stem 1	37.799
	CRR073298	Stem 2	34.991
	CRR073299	Stem 3	33.061
	CRR073300	Leaf 1	45.132
	CRR073301	Leaf 2	38.565
	CRR073302	Leaf 3	33.821
	CRR073303	Juvenile bud 1	35.785
	CRR073304	Juvenile bud 2	31.898
	CRR073305	Juvenile bud 3	50.132
	CRR073306	Third green 1	23.648
	CRR073307	Third green 2	18.921
	CRR073308	Third green 3	25.914
	CRR073309	Second white 1	20.126
	CRR073310	Second white 2	22.575
	CRR073311	Second white 3	28.016
	CRR073312	Silver flowering 1	28.623
	CRR073313	Silver flowering 2	28.154
	CRR073314	Silver flowering 3	24.043
	CRR073315	Gold flowering 1	25.526
	CRR073316	Gold flowering 2	38.083
	CRR073317	Gold flowering 3	26.755
	CRR073318	Tawny withering 1	19.022
	CRR073319	Tawny withering 2	18.090
	CRR073320	Tawny withering 3	19.205