Gene detail

Detail information of GWHGAAZE007372

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100114.1	0	PREDICTED: probable receptor-like protein kinase At1g67000 [Sesamum indicum]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	6E-144	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|M1CHY7\|M1CHY7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400067848}
TAIR10	AT5G38260.1	2E-129	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	44013075	44015343	-
GWHAAZE00000002	mRNA	44013075	44015343	-
GWHAAZE00000002	exon	44014539	44015343	-
GWHAAZE00000002	exon	44014395	44014436	-
GWHAAZE00000002	exon	44013075	44014198	-
GWHAAZE00000002	CDS	44014539	44015343	-
GWHAAZE00000002	CDS	44014395	44014436	-
GWHAAZE00000002	CDS	44013075	44014198	-

Transcript Sequence
>GWHTAAZE007380 ATGGTTTCCAATCTGTTCCCCACAGCTTCATATCTCTTCTCTGTAACCATTGCCACCATAATATCCACCTTCATTATGGTGATTCTGCCATGTTTCTGTCAAGAAAATGATCAATACACAACATGTGGAGAGTCGTTCCAATGTGGACATATTCAAAACATAGGCTATCCATTCTGGGGAGGGAATCAGCCAGACTACTGCGGCCATAGCGCATTCGAGCTAAAAAACTGCCAAGGCGATGTCCCCTTAATCTCAATCAACTCAATCACATACTGGGTTCTTTCACTCAACAAAAGAACCCGGTCCCTAACCATAGCTAGAGCCGACTTTTGGGACAACACTTGTCCTACACTTCTCCTTAACGCGTCCTTAGACTCGACTCCCTTTTCCTCTTCTTCCACCAACCATATCATAGCCCTGTACTATGGGTGCACCACAGTTCGAGGCCAAGTCGCACCCCTTCTGAAGCAGTTTAACTGCACTGTGAATGGAACCGGAAGTGTCAATTATTTCATGCTCAACGTGGGCCCGGGTACGAGTGACATGCTGAGTTGTAATAGTAGTGTCAGGGTACCAGTTAATGGAACATGGGGTCAGGCTTTAGCTAGTACCACGGGTTCGACCCGTGACCTAGAATTGGCTCTGGCTAGTGGTTTTGAGGTTCGTTGGACTGCTAATGACACTTTCTGTAACCAATGCCAAGGTTTGGGTGGGCGGTGTGGGTCGAACACGGGTTCGAATTTATTTTCTTGCTATTGTGCTGATGGGGTGTATGATAGCATATGTAACACAACAACTCAAAATGTACCTTCAAACCGCCTGAATCTTGGGTTGAAACTTGCCATAGGATTAATTAGCGGGGGTGCGGTTATTGTGTTTTTTGTAATAATATTCTGTTACCATAGAAGACGATTCCTAACAGTTATGGCCGGGAAGAAGGAGGATCAAATTGATGATAAAAATGTTGAAGCATTTCTAAGGAACCATGGATCTCTTACTCCAAAACGGTATGCCTATTTTGATATCAAGAAAATGACAAACTCATTTGCGGATAAACTAGGCGAAGGAGGATATGGCAGCGTTTTCAAAGGAAAGCTATCCGATGGTCGTCTAGTGGCTGTAAAGGTCCTCAATGATGTCAATGGAGATGGGATGGACTTTGTGAATGAAGTTTCTAGCATTAGTAGAACTTCTCATGTCAACATAGTCACACTGCTCGGATTCTGCTTGGAGAGGAATAAACGAGCTCTCGTTTATGAATTTATGCCCAATAAATCTTTAGACAAGTTTATACGTACCAGTGGATCATCTTCTTTGGATTGGGAAACATTATACCGAATTGCAGTTGGCACAGCTCGAGGTCTAGAGTACCTACACCAAGGGTGCAACACAAGGATTGTGCATTTCGACATAAAACCTGAAAACATTCTTCTGGATGAAGAATTCTGCCCAAAAATCTCCGATTTCGGTTTGGCTAAGCTATGCCAGAGGAAGAAAAGTATTGTCTCCATGTTGGGTGCAAGGGGAACTCCTGGATACATTGCGCCGGAAGTATTTTGTAGAAATTTTGGGGAGGTGTCTCATAAATCCGACGTCTATAGCTTTGGAATGATGGTTATTAATATGGTTGGAGTAGGAAAGAAGATAGAAGTTAGATCGAATTCGGATAGTACAAGTGAAATGTACTTTGTAGATATTATTTACAAGCATTTGGAACTTGGCGAAAATTCAAGTCTACTTCAAGGGGTAAAGAATGAAGACATAGAAGAAACGCGGAGGAAAATGGTTATGGTGAGTTTGTGGTGTATTCAAACGTATCCATCAGATCGGCCATCTATGAGTAAGGTGTTGGAGATGTTGGAAGGAAGTATTGAATCGATTGAAGTTGCGCCAAAGCCGTTCTTTCCTATGAGAGTGAACCTAGATTCTTTCTCGGCATTATCAGGAAGTTGTGAGATTGAACGACACTAG

Network for GWHGAAZE007372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	42	107	2.70E-11
PF14380.7	WAK_assoc	182	256	4.90E-15
PF00069.26	Pkinase	351	618	1.00E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.185
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.044
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.014
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.044
	SRR8316896	Juvenile bud stage	0.211
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.033
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.070
	SRR8316899	Complete white stage	0.020
	SRR8316903	Complete white stage	0.013
	SRR8316902	Silver flowering stage	0.069
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.914
	SRR8316907	Gold flowering stage	0.449
	SRR8316908	Gold flowering stage	0.957
SRP132670	SRR6706286	Control	0.025
	SRR6706287	Light intensity 50%	0.038
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.037
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.152
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.161
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.250
	CNS0095602	Golden flower (diploid) 2	0.038
	CNS0095603	Golden flower (diploid) 3	0.033
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.035
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.043
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.142
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.186
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.031
	CNS0095612	Silvery flower (diploied) 3	0.036
	CNS0095613	Golden flower (tetraploid) 1	0.067
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.014
CRA001975	CRR073297	Stem 1	0.012
	CRR073298	Stem 2	0.001
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.018
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.040
	CRR073312	Silver flowering 1	0.186
	CRR073313	Silver flowering 2	0.555
	CRR073314	Silver flowering 3	0.031
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.006
	CRR073318	Tawny withering 1	0.746
	CRR073319	Tawny withering 2	0.409
	CRR073320	Tawny withering 3	0.000