Detail information of GWHGAAZE007443


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265804.10PREDICTED: tubby-like F-box protein 5 [Vitis vinifera]
Swissprottr|Q6Z2G9|TLP5_ORYSJ0Tubby-like F-box protein 5
trEMBLtr|F6GWV6|F6GWV6_VITVI0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIR10AT2G18280.22E-146tubby like protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4538520545387647+
GWHAAZE00000002mRNA4538520545387647+
GWHAAZE00000002exon4538520545385552+
GWHAAZE00000002exon4538564445385731+
GWHAAZE00000002exon4538646945386598+
GWHAAZE00000002exon4538672545387647+
GWHAAZE00000002CDS4538520545385552+
GWHAAZE00000002CDS4538564445385731+
GWHAAZE00000002CDS4538646945386598+
GWHAAZE00000002CDS4538672545387370+
GWHAAZE00000002three_prime_UTR4538737145387647+
Transcript Sequence

Network for GWHGAAZE007443

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box531011.80E-08
PF01167.19Tub1163988.50E-107
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf104.771
SRR3591706second leaf25.995
SRR3591707mature leaf18.333
SRR3591708Shoot apex63.413
SRR3591709Stem74.096
SRR3591710White floral bud55.709
SRR3591711White flower39.100
SRR3591712Green floral bud67.560
SRR3591713Yellow flower24.821
SRP173429 SRR8316895Juvenile bud stage 43.895
SRR8316896Juvenile bud stage 47.862
SRR8316897Juvenile bud stage 23.747
SRR8316894Third green stage 26.236
SRR8316900Third green stage 93.520
SRR8316901Third green stage 75.314
SRR8316898Complete white stage 41.931
SRR8316899Complete white stage 154.151
SRR8316903Complete white stage 57.250
SRR8316902Silver flowering stage17.158
SRR8316904Silver flowering stage21.977
SRR8316905Silver flowering stage11.214
SRR8316906Gold flowering stage 30.688
SRR8316907Gold flowering stage 36.394
SRR8316908Gold flowering stage 30.100
SRP132670SRR6706286Control130.727
SRR6706287Light intensity 50%103.001
SRR6706288Light intensity 20%103.406
CNP0000432CNS0095592Slightly white alabastrum(diploid) 158.907
CNS0095593Slightly white alabastrum(diploid) 273.133
CNS0095594Slightly white alabastrum(diploid) 348.744
CNS0095595Whole white alabastrum(diploid) 269.351
CNS0095596Whole white alabastrum(diploid) 366.311
CNS0095597Whole white alabastrum(diploid) 462.934
CNS0095598Silvery flower (diploied) 157.954
CNS0095599Silvery flower (diploied) 251.853
CNS0095600Silvery flower (diploied) 365.649
CNS0095601Golden flower (diploid) 165.146
CNS0095602Golden flower (diploid) 257.635
CNS0095603Golden flower (diploid) 357.783
CNS0095604Slightly white alabastrum(tetraploid) 178.638
CNS0095605Slightly white alabastrum(tetraploid) 270.577
CNS0095606Slightly white alabastrum(tetraploid) 3116.040
CNS0095607Whole white alabastrum(tetraploid) 168.361
CNS0095608Whole white alabastrum(tetraploid) 261.456
CNS0095609Whole white alabastrum(tetraploid) 368.550
CNS0095610Silvery flower (diploied) 157.262
CNS0095611Silvery flower (diploied) 270.182
CNS0095612Silvery flower (diploied) 352.155
CNS0095613Golden flower (tetraploid) 132.178
CNS0095614Golden flower (tetraploid) 250.458
CNS0095615Golden flower (tetraploid) 340.347
CRA001975CRR073297Stem 193.823
CRR073298Stem 281.539
CRR073299Stem 360.651
CRR073300Leaf 1111.551
CRR073301Leaf 2126.721
CRR073302Leaf 376.820
CRR073303Juvenile bud 1103.194
CRR073304Juvenile bud 265.497
CRR073305Juvenile bud 3192.338
CRR073306Third green 133.417
CRR073307Third green 226.237
CRR073308Third green 333.255
CRR073309Second white 119.976
CRR073310Second white 219.982
CRR073311Second white 316.789
CRR073312Silver flowering 110.152
CRR073313Silver flowering 28.054
CRR073314Silver flowering 36.914
CRR073315Gold flowering 115.706
CRR073316Gold flowering 223.120
CRR073317Gold flowering 311.327
CRR073318Tawny withering 147.209
CRR073319Tawny withering 242.550
CRR073320Tawny withering 361.201