Detail information of GWHGAAZE007572


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01876.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068U042|A0A068U042_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01876.1}
TAIR10AT2G17840.12E-131Senescence/dehydration-associated protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4797224347977736+
GWHAAZE00000002mRNA4797224347977736+
GWHAAZE00000002exon4797224347972714+
GWHAAZE00000002exon4797324347973714+
GWHAAZE00000002exon4797421847974384+
GWHAAZE00000002exon4797640347976487+
GWHAAZE00000002exon4797755947977736+
GWHAAZE00000002CDS4797224347972714+
GWHAAZE00000002CDS4797324347973714+
GWHAAZE00000002CDS4797421847974384+
GWHAAZE00000002CDS4797640347976487+
GWHAAZE00000002CDS4797755947977736+
Transcript Sequence

Network for GWHGAAZE007572

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06911.13Senescence2644316.60E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19366SPG20 Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.663
SRR3591706second leaf13.181
SRR3591707mature leaf11.678
SRR3591708Shoot apex18.022
SRR3591709Stem44.934
SRR3591710White floral bud15.982
SRR3591711White flower16.834
SRR3591712Green floral bud20.468
SRR3591713Yellow flower16.234
SRP173429 SRR8316895Juvenile bud stage 12.063
SRR8316896Juvenile bud stage 17.845
SRR8316897Juvenile bud stage 6.605
SRR8316894Third green stage 6.155
SRR8316900Third green stage 18.555
SRR8316901Third green stage 18.243
SRR8316898Complete white stage 6.715
SRR8316899Complete white stage 22.745
SRR8316903Complete white stage 11.911
SRR8316902Silver flowering stage4.871
SRR8316904Silver flowering stage8.148
SRR8316905Silver flowering stage5.607
SRR8316906Gold flowering stage 15.142
SRR8316907Gold flowering stage 14.997
SRR8316908Gold flowering stage 12.396
SRP132670SRR6706286Control18.395
SRR6706287Light intensity 50%19.475
SRR6706288Light intensity 20%19.339
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.678
CNS0095593Slightly white alabastrum(diploid) 210.370
CNS0095594Slightly white alabastrum(diploid) 314.387
CNS0095595Whole white alabastrum(diploid) 211.544
CNS0095596Whole white alabastrum(diploid) 39.476
CNS0095597Whole white alabastrum(diploid) 410.568
CNS0095598Silvery flower (diploied) 113.710
CNS0095599Silvery flower (diploied) 29.317
CNS0095600Silvery flower (diploied) 313.409
CNS0095601Golden flower (diploid) 112.318
CNS0095602Golden flower (diploid) 212.715
CNS0095603Golden flower (diploid) 312.923
CNS0095604Slightly white alabastrum(tetraploid) 116.121
CNS0095605Slightly white alabastrum(tetraploid) 212.202
CNS0095606Slightly white alabastrum(tetraploid) 320.575
CNS0095607Whole white alabastrum(tetraploid) 115.512
CNS0095608Whole white alabastrum(tetraploid) 211.628
CNS0095609Whole white alabastrum(tetraploid) 317.782
CNS0095610Silvery flower (diploied) 118.295
CNS0095611Silvery flower (diploied) 214.863
CNS0095612Silvery flower (diploied) 317.284
CNS0095613Golden flower (tetraploid) 112.793
CNS0095614Golden flower (tetraploid) 217.903
CNS0095615Golden flower (tetraploid) 310.413
CRA001975CRR073297Stem 114.261
CRR073298Stem 212.834
CRR073299Stem 38.966
CRR073300Leaf 115.304
CRR073301Leaf 213.578
CRR073302Leaf 312.672
CRR073303Juvenile bud 111.581
CRR073304Juvenile bud 210.861
CRR073305Juvenile bud 313.639
CRR073306Third green 16.222
CRR073307Third green 25.550
CRR073308Third green 36.303
CRR073309Second white 16.626
CRR073310Second white 26.427
CRR073311Second white 39.124
CRR073312Silver flowering 17.022
CRR073313Silver flowering 27.762
CRR073314Silver flowering 38.347
CRR073315Gold flowering 14.966
CRR073316Gold flowering 27.898
CRR073317Gold flowering 38.615
CRR073318Tawny withering 114.779
CRR073319Tawny withering 212.638
CRR073320Tawny withering 319.844