Detail information of GWHGAAZE007628


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265847.13.38571E-71PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Vitis vinifera]
Swissprottr|O24473|IF2B_WHEAT2E-67Eukaryotic translation initiation factor 2 subunit beta
trEMBLtr|F6GU78|F6GU78_VITVI1E-71Putative uncharacterized protein {ECO:0000313|EMBL:CCB43394.1}
TAIR10AT5G20920.23E-48eukaryotic translation initiation factor 2 beta subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4906163949063854+
GWHAAZE00000002mRNA4906163949063854+
GWHAAZE00000002exon4906163949061747+
GWHAAZE00000002exon4906214049062237+
GWHAAZE00000002exon4906252649062619+
GWHAAZE00000002exon4906276749062913+
GWHAAZE00000002exon4906316949063218+
GWHAAZE00000002exon4906364549063854+
GWHAAZE00000002CDS4906163949061747+
GWHAAZE00000002CDS4906214049062237+
GWHAAZE00000002CDS4906252649062619+
GWHAAZE00000002CDS4906276749062913+
GWHAAZE00000002CDS4906316949063218+
GWHAAZE00000002CDS4906364549063710+
GWHAAZE00000002three_prime_UTR4906371149063854+
Transcript Sequence

Network for GWHGAAZE007628

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0068GO:0006413 translational initiation GOslim:biological_process
GO:0003743 translation initiation factor activity GOslim:molecular_function
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function
map00410 beta-Alanine metabolism
map00280 Valine, leucine and isoleucine degradation
map00640 Propanoate metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01873.18eIF-5_eIF-2B1081691.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03238EIF2S2 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.142
SRR3591712Green floral bud0.102
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.537
SRR8316896Juvenile bud stage 2.604
SRR8316897Juvenile bud stage 1.385
SRR8316894Third green stage 1.444
SRR8316900Third green stage 3.233
SRR8316901Third green stage 3.457
SRR8316898Complete white stage 2.406
SRR8316899Complete white stage 5.963
SRR8316903Complete white stage 4.343
SRR8316902Silver flowering stage1.434
SRR8316904Silver flowering stage2.157
SRR8316905Silver flowering stage1.278
SRR8316906Gold flowering stage 3.504
SRR8316907Gold flowering stage 1.941
SRR8316908Gold flowering stage 2.990
SRP132670SRR6706286Control0.567
SRR6706287Light intensity 50%0.525
SRR6706288Light intensity 20%0.718
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.954
CNS0095593Slightly white alabastrum(diploid) 22.821
CNS0095594Slightly white alabastrum(diploid) 32.981
CNS0095595Whole white alabastrum(diploid) 22.411
CNS0095596Whole white alabastrum(diploid) 31.353
CNS0095597Whole white alabastrum(diploid) 43.154
CNS0095598Silvery flower (diploied) 15.344
CNS0095599Silvery flower (diploied) 22.265
CNS0095600Silvery flower (diploied) 31.775
CNS0095601Golden flower (diploid) 13.817
CNS0095602Golden flower (diploid) 21.454
CNS0095603Golden flower (diploid) 31.514
CNS0095604Slightly white alabastrum(tetraploid) 10.271
CNS0095605Slightly white alabastrum(tetraploid) 20.207
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.012
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.225
CNS0095610Silvery flower (diploied) 10.082
CNS0095611Silvery flower (diploied) 20.000
CNS0095612Silvery flower (diploied) 30.080
CNS0095613Golden flower (tetraploid) 10.074
CNS0095614Golden flower (tetraploid) 20.144
CNS0095615Golden flower (tetraploid) 30.002
CRA001975CRR073297Stem 11.067
CRR073298Stem 20.830
CRR073299Stem 30.189
CRR073300Leaf 10.914
CRR073301Leaf 22.245
CRR073302Leaf 30.124
CRR073303Juvenile bud 10.374
CRR073304Juvenile bud 20.213
CRR073305Juvenile bud 30.364
CRR073306Third green 10.017
CRR073307Third green 20.036
CRR073308Third green 30.040
CRR073309Second white 10.411
CRR073310Second white 20.097
CRR073311Second white 30.094
CRR073312Silver flowering 10.024
CRR073313Silver flowering 20.114
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.185
CRR073316Gold flowering 20.246
CRR073317Gold flowering 30.041
CRR073318Tawny withering 10.420
CRR073319Tawny withering 20.502
CRR073320Tawny withering 30.644