Gene detail

Detail information of GWHGAAZE007792

Functional Annotation

Database	Orthologs	Annotation
Nr	CAA09804.2	1-deoxyxylulose 5-phosphate synthase [Catharanthus roseus]
Swissprot	tr\|Q6YU51\|DXS2_ORYSJ	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|O82676\|O82676_CATRO	1-deoxyxylulose 5-phosphate synthase {ECO:0000313\|EMBL:CAA09804.2}
TAIR10	AT4G15560.1	Deoxyxylulose-5-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	52716152	52721248	+
GWHAAZE00000002	mRNA	52716152	52721248	+
GWHAAZE00000002	exon	52716152	52716312	+
GWHAAZE00000002	exon	52716440	52716613	+
GWHAAZE00000002	exon	52717411	52717575	+
GWHAAZE00000002	exon	52717804	52717954	+
GWHAAZE00000002	exon	52718174	52718445	+
GWHAAZE00000002	exon	52718724	52718997	+
GWHAAZE00000002	exon	52719077	52719666	+
GWHAAZE00000002	exon	52720160	52720444	+
GWHAAZE00000002	exon	52721102	52721248	+
GWHAAZE00000002	five_prime_UTR	52716152	52716222	+
GWHAAZE00000002	CDS	52716223	52716312	+
GWHAAZE00000002	CDS	52716440	52716613	+
GWHAAZE00000002	CDS	52717411	52717575	+
GWHAAZE00000002	CDS	52717804	52717954	+
GWHAAZE00000002	CDS	52718174	52718445	+
GWHAAZE00000002	CDS	52718724	52718997	+
GWHAAZE00000002	CDS	52719077	52719666	+
GWHAAZE00000002	CDS	52720160	52720444	+
GWHAAZE00000002	CDS	52721102	52721248	+

Transcript Sequence
>GWHTAAZE007800 CCTTCTCTAACACCTCCCTCATTCCTCCCCTCTCTCCTCTAGTCTCCAACAATAGTTTAATCAATCTAACCATGGCGATTTCCGGCTCTCTAGTTCGCGTAAACCCGACTGTAACCCCAATGCTTAAACCTTCAAGGCTAAGCCCCAGTGCAAGGAAAAAGTTCTGCGCAAGAGCTTCGGCTAGTAGTAGAGATGGTGATAGTAAGGAAGGGGGGAAGTTGATGATTAAGACCGAGAAAGAAGGCTGGAAGATTGATTTCTCTGGAGAAAAGCCACCTACTCCATTGTTGGATACTATCGATTATCCAGTTCACCTCAAGAACCTCTCCACTAAGGATCTTGAACAACTAGCAGCAGAGCTAAGAGTAGAAATAGTATACACAGTAGCACAGATAGGTGGGCATCTAAGTGCAAGCTTAGGAGTGATAGAGTTGGCTGTGGCTATGCACCATGTTTTCAACACCCCTGAAGACAGAATCATTTGGGATGTTGGCCATCAGGCATACCCACACAAAATTCTCACAGGAAGGAGGTCTAAAATGCACACCATAAGAAAAACCTCTGGGCTAGCTGGATTTCCTAAAAGGGATGAGAGCGTTTACGATGCCTTTGGTGCTGGCCACAGCTCTACAAGCATCTCTGCTGGTCTTGGTATGGCGGTTGGGAGAGATCTTTTAGGCAAGAGCAACAATGTGATATCTGTAATCGGAGATGGAGCAATGACAGCAGGACAAGCATATGAAGCAATGAACAATGCAGGGTTCCTTGATTCTAACCTAATCGTTGTACTAAATGACAATAAGCAGGTATCCTTGCCCACTGCTACTCTCGACGGCCCTGCAACTCCAGTCGGCGCCCTCAGCAGTGCGTTATCGAAGCTCCAAGCGAGCCCCAAGTTCCGCCAACTTCGCGAAGCAGCAAAAAGTGTCACTAAGCAAATCGGACCCCAAGCACACGAACTTGCAGCCAAAGTAGATGAATACGCAAGAGGCATGGTTAGTGCTACCGGGGCCACTCTCTTTGAGGAGCTCGGATTATATTACATCGGTCCAGTGGATGGGCACAACCTAGAAGATTTAGTCACCATTTTTGAAAAAGTAAAGTCAACGCCAGCAGCAGGTCCAGTCCTTATTCACATCGTAACAGAGAAAGGAAAAGGCTATCCCCCAGCCGAGGCAGCAGCTGATAAAATGCACGGGGTGGTGAAGTTCGATGTGAAGACAGGAAAGCAAATTAAGACCAAGGCTCCTACACTTTCGTATACTCAATATTTCGCAGAATCACTGATAAAAGAAGCCGAGGTTGATGAGAAGATTGTGGCCATCCATGCGGCAATGGGTGGTGGAACCGGCCTCAACTATTTCCAAAAGAGATTCCCAGAACGTTGTTTTGATGTCGGCATAGCTGAGCAACACGCAGTTACATTTGCAGCCGGTTTAGCCACAGAGGGGCTCAAGCCATTCTGTGCTATATATTCGTCATTTTTGCAAAGGGGCTATGATCAGGTGGTGCACGATGTGGATCTTCAAAAGATACCGGTCCGGTTTGCAATGGACCGAGCTGGTTTGGTTGGTGCCGATGGACCTACGCATTGTGGTGCGTTTGACATCACGTACATGGCTTGCCTGCCTAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATAGTTGCCACAGCTGCCACCATCGATGATAGGCCGAGTTGCTTTAGGTTTCCAAGGGGTAATGGAATTGGAGCAGTTCTCCCTCCAAACAACAAAGGAACTCCTATTGAGATTGGGAAGGGAAGAATACTGATTGAAGGAACTAGAGTAGCAATACTGGGATACGGTTCGATAGTACAACAGTGTTTAGGAGCTGCAGGGATGCTCAAATCCCACAACATAACTACAACAGTGGCTGATGCTAGGTTCTGCAAGCCATTGGATGCGGATCTTATCAAGAGATTGGCCAAAGAACACGAGGTCTTAATAACCGTGGAGGAAGGTTCCGTTGGAGGTTTCGGGTCTCATGTAGCTCATTTCCTATGCTTAACTGGTCTTCTTGATGGACCCCTAAAGTTGAGATCAATGGTACTTCCTGATAAATACATTGACCATGGAGCACCACAAGATCAGATTGAAGAAGCTGGTCTAACTTCAAGGCATATCTGTTCAACGGTGTTATCTCTACTAGGAATGCCCAAAGAAGCTCTTAAAATCAAGTGA

Network for GWHGAAZE007792

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264	map00626 Naphthalene degradation map00830 Retinol metabolism map00625 Chloroalkane and chloroalkene degradation map01220 Degradation of aromatic compounds GO:0055114 oxidation-reduction process GOslim:biological_process map00071 Fatty acid degradation map00680 Methane metabolism map00350 Tyrosine metabolism map00982 Drug metabolism - cytochrome P450 map00980 Metabolism of xenobiotics by cytochrome P450 map00010 Glycolysis / Gluconeogenesis CYTOCHROME_P536_Family CYTOCHROME_P536_Family CYTOCHROME_P525_Family CYTOCHROME_P525_Family map01110 Biosynthesis of secondary metabolites map01200 Carbon metabolism map00900 Terpenoid backbone biosynthesis GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function GO:0005506 iron ion binding GOslim:molecular_function GO:0020037 heme binding GOslim:molecular_function map01120 Microbial metabolism in diverse environments GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity GOslim:molecular_function GO:0070402 NADPH binding GOslim:molecular_function GO:0016114 terpenoid biosynthetic process GOslim:biological_process map01100 Metabolic pathways map00902 Monoterpenoid biosynthesis

Module ID

Function Annotation

CFinderModule0264

map00626 Naphthalene degradation
map00830 Retinol metabolism
map00625 Chloroalkane and chloroalkene degradation
map01220 Degradation of aromatic compounds
GO:0055114 oxidation-reduction process GOslim:biological_process
map00071 Fatty acid degradation
map00680 Methane metabolism
map00350 Tyrosine metabolism
map00982 Drug metabolism - cytochrome P450
map00980 Metabolism of xenobiotics by cytochrome P450
map00010 Glycolysis / Gluconeogenesis
CYTOCHROME_P536_Family CYTOCHROME_P536_Family
CYTOCHROME_P525_Family CYTOCHROME_P525_Family
map01110 Biosynthesis of secondary metabolites
map01200 Carbon metabolism
map00900 Terpenoid backbone biosynthesis
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function
GO:0005506 iron ion binding GOslim:molecular_function
GO:0020037 heme binding GOslim:molecular_function
map01120 Microbial metabolism in diverse environments
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity GOslim:molecular_function
GO:0070402 NADPH binding GOslim:molecular_function
GO:0016114 terpenoid biosynthetic process GOslim:biological_process
map01100 Metabolic pathways
map00902 Monoterpenoid biosynthesis

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	73	358	2.10E-108
PF02779.25	Transket_pyr	395	556	8.80E-41
PF02780.21	Transketolase_C	574	697	4.30E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.293
	SRR3591706	second leaf	269.224
	SRR3591707	mature leaf	35.622
	SRR3591708	Shoot apex	121.442
	SRR3591709	Stem	1.304
	SRR3591710	White floral bud	1.014
	SRR3591711	White flower	0.372
	SRR3591712	Green floral bud	34.281
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	61.056
	SRR8316896	Juvenile bud stage	37.756
	SRR8316897	Juvenile bud stage	16.756
	SRR8316894	Third green stage	5.835
	SRR8316900	Third green stage	1.432
	SRR8316901	Third green stage	3.283
	SRR8316898	Complete white stage	0.102
	SRR8316899	Complete white stage	5.577
	SRR8316903	Complete white stage	0.410
	SRR8316902	Silver flowering stage	0.039
	SRR8316904	Silver flowering stage	0.012
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.063
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	11.495
	SRR6706287	Light intensity 50%	5.856
	SRR6706288	Light intensity 20%	7.845
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.896
	CNS0095593	Slightly white alabastrum(diploid) 2	40.110
	CNS0095594	Slightly white alabastrum(diploid) 3	51.720
	CNS0095595	Whole white alabastrum(diploid) 2	84.220
	CNS0095596	Whole white alabastrum(diploid) 3	3.515
	CNS0095597	Whole white alabastrum(diploid) 4	56.786
	CNS0095598	Silvery flower (diploied) 1	4.211
	CNS0095599	Silvery flower (diploied) 2	2.957
	CNS0095600	Silvery flower (diploied) 3	0.129
	CNS0095601	Golden flower (diploid) 1	0.094
	CNS0095602	Golden flower (diploid) 2	0.018
	CNS0095603	Golden flower (diploid) 3	0.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.173
	CNS0095605	Slightly white alabastrum(tetraploid) 2	58.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	238.501
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.267
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.336
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.447
	CNS0095610	Silvery flower (diploied) 1	0.156
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.045
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	41.209
	CRR073298	Stem 2	59.460
	CRR073299	Stem 3	55.417
	CRR073300	Leaf 1	1.544
	CRR073301	Leaf 2	1.291
	CRR073302	Leaf 3	0.837
	CRR073303	Juvenile bud 1	6.753
	CRR073304	Juvenile bud 2	0.339
	CRR073305	Juvenile bud 3	5.448
	CRR073306	Third green 1	0.062
	CRR073307	Third green 2	0.198
	CRR073308	Third green 3	0.084
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.073
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.096
	CRR073315	Gold flowering 1	13.971
	CRR073316	Gold flowering 2	24.659
	CRR073317	Gold flowering 3	42.574
	CRR073318	Tawny withering 1	76.673
	CRR073319	Tawny withering 2	38.774
	CRR073320	Tawny withering 3	172.655