Gene detail

Detail information of GWHGAAZE007835

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006465847.1	0	PREDICTED: putative uncharacterized protein At4g01020, chloroplastic-like [Citrus sinensis]
Swissprot	tr\|P0CE10\|Y4102_ARATH	2E-136	Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBL	tr\|V4RXD4\|V4RXD4_9ROSI	1E-179	Uncharacterized protein {ECO:0000313\|EMBL:ESR39558.1}
TAIR10	AT4G01020.1	1E-114	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	53909011	53910918	+
GWHAAZE00000002	mRNA	53909011	53910918	+
GWHAAZE00000002	exon	53909011	53909110	+
GWHAAZE00000002	exon	53909256	53910143	+
GWHAAZE00000002	exon	53910239	53910440	+
GWHAAZE00000002	exon	53910861	53910918	+
GWHAAZE00000002	CDS	53909011	53909110	+
GWHAAZE00000002	CDS	53909256	53910143	+
GWHAAZE00000002	CDS	53910239	53910440	+
GWHAAZE00000002	CDS	53910861	53910918	+

Transcript Sequence
>GWHTAAZE007843 ATGCAAGGCAGAAAGGAGGAAGTTACGTTGAAGAGCATAACTGGAGCAGTAACCATGATGATGAATTTAGGATGTCACAAAGAGTATTTTGTTGGAAGAAGTGCGGAATGCAATCTAGACCGAAACGAGAATGGCTCCTACCGAGTAAAAATATCTGCCAATGCTACCAAAACTGTAGCTGAGTTGAGGAGACCTCTAGAGCAGCTCATGAAAGGAAAAACCATAGAACATGCTGGCCTCACTCCTACAGTCCTACAATTTCTCTTCTCCCGAGACGGCATTAATCTCATGAAGTCAATACAGAAAGAAACAGGAACCCATATTTTCTTCGACAGACACAACCTTAATGTGAGGATCTTTGGTTCCTCTGACAATACTGATGTGGCACAACAGAGATTGGTTCAGTCCCTTTTAACAATGCATCAAAGCAAGCAGCTTGAAGTCCATCTTCGAGGTGGAAATTTCCCCCCTGATTTGATGAAAAGAGTGGTCGCCAGGTTCGGGCCAGACCTTCACGGGCTTAAGAATGAGGTTCCCGGGGCGGAATTCAGCCTAAACACAAAGTATCATGTCATCTCTATTCATGGTTCCAAACAGTTGAAGCAAAAAGTTGAGGACATAATATATGAGATCGCACAAACAAGTGGCCCCTCAAAAGTGGTCGAAGATGAAGCTGCCTGTCCCATTTGCTTGTGTGAAGTGGAGGATAGTTACCGACTCGAAAGCTGCACCCACGAATTCTGCCGGTCATGTTTAGCGGAGCAGTGCGAGTCGGCGCTTAAAAGCCGGGACAGTTTCCCAATGTGCTGTGCCCAGAAGGATTGTGGGGCACCTATATTACTCACTGACTTGAGGTCTCTATTGTCAAGCGAGAAGTTGGAGGAGCTCTTTAGGGCATCTTTGGGGGCATTTGTGGCAGCCAGTGGTGGCACTTACCGGTTTTGCCCCTCCCCGGACTGCCCTTCAGTCTATGAAGTGGAGGGCGAAGTACAGGAATTCAAAGAAGATCCAGATTCATCGTTGAAGGAGTGGTGCGAGGGGAAAGATAATGTTAAACACTGCCCTGTTTGTGGGTTTACAATTGAGAAGTATGAAGGGTGCAACCATGTGGAGTGCAGGTGTGGGAGGCACATTTGTTGGGTCTGCCTGGAGTTCTTTGCGACCAGCGATGATTGCTATGGCCATTTGAGTGCTGGCAGTACTTTGTACATTGAGGCATCTTCTCCCCTCTATTATAACAAAAACTGA

Network for GWHGAAZE007835

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K12818	DHX8, PRP22	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.583
	SRR3591706	second leaf	11.923
	SRR3591707	mature leaf	14.367
	SRR3591708	Shoot apex	22.956
	SRR3591709	Stem	36.878
	SRR3591710	White floral bud	21.540
	SRR3591711	White flower	25.333
	SRR3591712	Green floral bud	21.571
	SRR3591713	Yellow flower	16.482
SRP173429	SRR8316895	Juvenile bud stage	9.905
	SRR8316896	Juvenile bud stage	12.234
	SRR8316897	Juvenile bud stage	5.321
	SRR8316894	Third green stage	5.360
	SRR8316900	Third green stage	10.720
	SRR8316901	Third green stage	12.379
	SRR8316898	Complete white stage	3.422
	SRR8316899	Complete white stage	16.082
	SRR8316903	Complete white stage	8.175
	SRR8316902	Silver flowering stage	4.358
	SRR8316904	Silver flowering stage	6.195
	SRR8316905	Silver flowering stage	2.737
	SRR8316906	Gold flowering stage	10.529
	SRR8316907	Gold flowering stage	10.018
	SRR8316908	Gold flowering stage	9.608
SRP132670	SRR6706286	Control	12.615
	SRR6706287	Light intensity 50%	12.347
	SRR6706288	Light intensity 20%	12.939
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.082
	CNS0095593	Slightly white alabastrum(diploid) 2	12.246
	CNS0095594	Slightly white alabastrum(diploid) 3	14.995
	CNS0095595	Whole white alabastrum(diploid) 2	11.102
	CNS0095596	Whole white alabastrum(diploid) 3	8.580
	CNS0095597	Whole white alabastrum(diploid) 4	10.250
	CNS0095598	Silvery flower (diploied) 1	18.365
	CNS0095599	Silvery flower (diploied) 2	14.971
	CNS0095600	Silvery flower (diploied) 3	15.152
	CNS0095601	Golden flower (diploid) 1	19.523
	CNS0095602	Golden flower (diploid) 2	18.333
	CNS0095603	Golden flower (diploid) 3	16.621
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.504
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.294
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.236
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.917
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.146
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.338
	CNS0095610	Silvery flower (diploied) 1	15.342
	CNS0095611	Silvery flower (diploied) 2	18.679
	CNS0095612	Silvery flower (diploied) 3	19.730
	CNS0095613	Golden flower (tetraploid) 1	11.711
	CNS0095614	Golden flower (tetraploid) 2	14.682
	CNS0095615	Golden flower (tetraploid) 3	8.937
CRA001975	CRR073297	Stem 1	21.166
	CRR073298	Stem 2	20.742
	CRR073299	Stem 3	23.117
	CRR073300	Leaf 1	21.235
	CRR073301	Leaf 2	19.505
	CRR073302	Leaf 3	13.778
	CRR073303	Juvenile bud 1	20.383
	CRR073304	Juvenile bud 2	14.479
	CRR073305	Juvenile bud 3	26.716
	CRR073306	Third green 1	15.074
	CRR073307	Third green 2	11.484
	CRR073308	Third green 3	13.904
	CRR073309	Second white 1	10.232
	CRR073310	Second white 2	13.392
	CRR073311	Second white 3	9.374
	CRR073312	Silver flowering 1	10.283
	CRR073313	Silver flowering 2	11.795
	CRR073314	Silver flowering 3	10.196
	CRR073315	Gold flowering 1	18.599
	CRR073316	Gold flowering 2	23.386
	CRR073317	Gold flowering 3	15.532
	CRR073318	Tawny withering 1	27.758
	CRR073319	Tawny withering 2	19.775
	CRR073320	Tawny withering 3	21.557