Gene detail

Detail information of GWHGAAZE007857

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007208027.1	0	hypothetical protein PRUPE_ppa003078mg [Prunus persica]
Swissprot	tr\|C0LGT1\|Y5129_ARATH	1E-171	Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (Precursor)
trEMBL	tr\|M5W7D2\|M5W7D2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09226.1}
TAIR10	AT5G10290.1	2E-130	leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	54495258	54502801	+
GWHAAZE00000002	mRNA	54495258	54502801	+
GWHAAZE00000002	exon	54495258	54495418	+
GWHAAZE00000002	exon	54495519	54495590	+
GWHAAZE00000002	exon	54496911	54497054	+
GWHAAZE00000002	exon	54497156	54497227	+
GWHAAZE00000002	exon	54497388	54497453	+
GWHAAZE00000002	exon	54497554	54497618	+
GWHAAZE00000002	exon	54497733	54497876	+
GWHAAZE00000002	exon	54499016	54499357	+
GWHAAZE00000002	exon	54501455	54501519	+
GWHAAZE00000002	exon	54502487	54502801	+
GWHAAZE00000002	CDS	54495258	54495418	+
GWHAAZE00000002	CDS	54495519	54495590	+
GWHAAZE00000002	CDS	54496911	54497054	+
GWHAAZE00000002	CDS	54497156	54497227	+
GWHAAZE00000002	CDS	54497388	54497453	+
GWHAAZE00000002	CDS	54497554	54497618	+
GWHAAZE00000002	CDS	54497733	54497876	+
GWHAAZE00000002	CDS	54499016	54499357	+
GWHAAZE00000002	CDS	54501455	54501519	+
GWHAAZE00000002	CDS	54502487	54502801	+

Transcript Sequence
>GWHTAAZE007865 ATGGCTAGTAATTGGAACTTGTTTCCAGGAGACGCACTCATTTCATTGAGGAGTTCGCTGAATGCGTCAGCCAATCAACTCACAGATTGGAATCTGAATCAAGTTAACCCATGCACTTGGTCAAAAGTTATTTGTGACCCTAATAATAAAGTCATTTCTGTATCATTGTCATCCATGGGGTTTTCTGGAGTCTTGTCTCCTAAAGTAGGAGTTCTGAAGACTCTTTCAACACTTTCATTGCAAGGAAATGGGATAACAGGTGAGATACCAAAAGAGTTTGGGAATTTGACAAGCCTGACAATGTTGGATTTGGAAAATAACCATTTGACAGGACAAATACCGTCTTCCCTTGGGAACCTAAAGAACCTCCAGTTCTTGGTTTTGAATCAAAACAATCTTACTGGGGCAATCCCTGAGTCACTTACAGATATTCCAAGCTTGATTAACCTTCAGCTTGCTTCAAACGGTCTCACCGGTCAAATACCTGATAGTTTATTTCATGTTTCAAAATACAATTTTACAGGAAACAAGTTAAATTGTGGCATGAATTTTGCCAGACTTTGTGCATCTGATGGTGGAGGTTCTTCACATAAACCAAAGACTGGGATTGTAATTGGGATTGTTGGTGGACTACTGTCTCTTCTTCTCATTGGATGCTTATTGTTGTTCGTGTGGAAGGGCAGGCATAGAGGCTATAAGCGTGAAGTTTTTGTGGACGTTGCAGGGGAAGTTGACCGAAGAATTGCATTTGGTCAATTAAAACGATTTGCATGGAGGGAATTACAGCTAGCTACAGACAACTTCAGCGAGAAAAATGTTCTTGGACAGGGAGGTTTTGGGAAGGTTTATAAAGGATTACTTGCTGATAACACAAAAGTCGCTGTCAAACGGTTAACTGATTATGAGAGTCCAGGTGGAGATGCCGCATTCCAGCGGGAGGTTGAGATGATTAGCGTGGCTGTTCATAAAAATCTCTTACGACTCATTGGGTTTTGCACCACGCCAACAGAAAGGCTTTTGGTTTATCCTTTTATGCAGAACTTAAGTGTTGCCTATCGACTACGAGCTGTGGACATTGATGCAGAGATTAAACCTGGGGAGGCTGTTTTGGATTGGTCAACAAGAAAACAAGTGAAAAAACTAGAGAGAGAAAAAAGACTAGAAGCAATAGTAGACCGCAACCTTCGAAGAGAGTACAAGATCCAAGAAGTGGAAATGATGATACAGGTTGCACTCCTCTGCACCCAATCCTCGCCAGAGGACCGGCCAGCCATGTCAGAGGTGGTGCGGATGTTGGAGGGAGAGGGGTTGGCTGAGAGGTGGGAAGAATGGCAGCACGTTGAAGTTAACAGAAGGCAAGAGTACGAGAGACTACAGAGAAGATTTGATTGGGGTGAAGATTCTATTTATAACCAGGACGCAATCGAGTTATCTGGTGGAAGATGA

Network for GWHGAAZE007857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	10	46	3.60E-08
PF13855.7	LRR_8	74	133	2.30E-08
PF07714.18	PK_Tyr_Ser-Thr	271	356	1.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.631
	SRR3591706	second leaf	28.578
	SRR3591707	mature leaf	18.809
	SRR3591708	Shoot apex	37.235
	SRR3591709	Stem	61.034
	SRR3591710	White floral bud	42.699
	SRR3591711	White flower	45.565
	SRR3591712	Green floral bud	43.994
	SRR3591713	Yellow flower	27.746
SRP173429	SRR8316895	Juvenile bud stage	20.903
	SRR8316896	Juvenile bud stage	27.176
	SRR8316897	Juvenile bud stage	15.211
	SRR8316894	Third green stage	13.781
	SRR8316900	Third green stage	38.595
	SRR8316901	Third green stage	30.756
	SRR8316898	Complete white stage	18.929
	SRR8316899	Complete white stage	56.409
	SRR8316903	Complete white stage	32.557
	SRR8316902	Silver flowering stage	11.865
	SRR8316904	Silver flowering stage	18.339
	SRR8316905	Silver flowering stage	7.463
	SRR8316906	Gold flowering stage	31.353
	SRR8316907	Gold flowering stage	18.493
	SRR8316908	Gold flowering stage	31.134
SRP132670	SRR6706286	Control	36.336
	SRR6706287	Light intensity 50%	39.531
	SRR6706288	Light intensity 20%	39.540
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.475
	CNS0095593	Slightly white alabastrum(diploid) 2	24.816
	CNS0095594	Slightly white alabastrum(diploid) 3	18.073
	CNS0095595	Whole white alabastrum(diploid) 2	21.537
	CNS0095596	Whole white alabastrum(diploid) 3	17.396
	CNS0095597	Whole white alabastrum(diploid) 4	16.408
	CNS0095598	Silvery flower (diploied) 1	28.173
	CNS0095599	Silvery flower (diploied) 2	28.164
	CNS0095600	Silvery flower (diploied) 3	32.128
	CNS0095601	Golden flower (diploid) 1	32.206
	CNS0095602	Golden flower (diploid) 2	32.485
	CNS0095603	Golden flower (diploid) 3	28.277
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.683
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.295
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.295
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.514
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.687
	CNS0095610	Silvery flower (diploied) 1	32.176
	CNS0095611	Silvery flower (diploied) 2	32.181
	CNS0095612	Silvery flower (diploied) 3	16.385
	CNS0095613	Golden flower (tetraploid) 1	12.030
	CNS0095614	Golden flower (tetraploid) 2	28.072
	CNS0095615	Golden flower (tetraploid) 3	14.951
CRA001975	CRR073297	Stem 1	30.932
	CRR073298	Stem 2	29.941
	CRR073299	Stem 3	25.496
	CRR073300	Leaf 1	35.023
	CRR073301	Leaf 2	32.751
	CRR073302	Leaf 3	32.464
	CRR073303	Juvenile bud 1	35.633
	CRR073304	Juvenile bud 2	33.104
	CRR073305	Juvenile bud 3	40.036
	CRR073306	Third green 1	9.272
	CRR073307	Third green 2	12.346
	CRR073308	Third green 3	12.515
	CRR073309	Second white 1	6.264
	CRR073310	Second white 2	3.955
	CRR073311	Second white 3	2.423
	CRR073312	Silver flowering 1	1.806
	CRR073313	Silver flowering 2	1.882
	CRR073314	Silver flowering 3	1.825
	CRR073315	Gold flowering 1	12.565
	CRR073316	Gold flowering 2	15.761
	CRR073317	Gold flowering 3	13.533
	CRR073318	Tawny withering 1	28.271
	CRR073319	Tawny withering 2	27.261
	CRR073320	Tawny withering 3	23.441