Gene detail

Detail information of GWHGAAZE007885

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010261237.1	5.9674E-169	PREDICTED: phosphoglycerate mutase-like [Nelumbo nucifera]
Swissprot	tr\|Q9SCS3\|PGML4_ARATH	0.000000002	Phosphoglycerate mutase-like protein 4 {ECO:0000305}
trEMBL	tr\|M5XCB1\|M5XCB1_PRUPE	4E-161	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23559.1}
TAIR10	AT1G22170.1	4E-112	Phosphoglycerate mutase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	55321108	55325637	-
GWHAAZE00000002	mRNA	55321108	55325637	-
GWHAAZE00000002	exon	55321108	55321152	-
GWHAAZE00000002	exon	55321419	55321538	-
GWHAAZE00000002	exon	55321882	55321983	-
GWHAAZE00000002	exon	55322707	55322863	-
GWHAAZE00000002	exon	55322964	55323082	-
GWHAAZE00000002	exon	55324909	55325132	-
GWHAAZE00000002	exon	55325385	55325637	-
GWHAAZE00000002	CDS	55325385	55325637	-
GWHAAZE00000002	CDS	55324909	55325132	-
GWHAAZE00000002	CDS	55322964	55323082	-
GWHAAZE00000002	CDS	55322707	55322863	-
GWHAAZE00000002	CDS	55321882	55321983	-
GWHAAZE00000002	CDS	55321419	55321538	-
GWHAAZE00000002	CDS	55321108	55321152	-

Transcript Sequence
>GWHTAAZE007893 ATGGCTACTGCTGCTTTTCACCAAGCTATTGGGGCCAGTCAAATCCATAGATTTGGTGATGATTTGACTTCTCATGATGGATTAAGGAACTTATCAAGGTGTTCTGGAATTGAGATGCCGTTGTTAAGAAAAAACTGGAGATCTAGCCATTTTAAGATGCGCATAATCCATACATTAAAATCTACTTCTTCACGTATAGATCCAATTTTATCCTCCTTGCAGATTAACCTCAACAACTCTTTGAAGAACTCAAATGAATCTGCTTTGATCTTGATTCGCCATGGTGAGTCGATGTGGAATGCAAAAAACTTATTCACTGGTTGTGTTGATGTTCCATTGACCAAGAAAGGTGTAGAAGAAGCAATTGAAGCAGGTAAGAAAATTAGCAACATACCCATTGACATGATCTACACATCAGGACTGGTTCGTTCGCAAATGACGGCTATGCTTGCCTTGACCCAACATTGCTGCAAAAAGGTGCCCATAGTTATGCATAATGAGAGTGAACAAGCAATAGTATGGAGTCAAATTTATAGCGAATACACCAAGCAGCAATCTATTCCAGTTTTTAAAGCCTGGCAATTGAATGAAAGAATGTATGGGGATCTACAAGGCTTTAATAAGCAGGAGACAGCTGAAGTTTATGGGAAGGACCAAGTTCACAAGTGGCGTAGAAGTTATTACGTTCAGCCCCCAAATGGCGAGAGCTTGGAAATGTGCTTGCAAAGAGCTGTTACTTTTTTCAAAGAACAGATTGAACCGCAACTTTGGGCCAGAAATCATGTGATGGTTGTTGCCCATGCAAATTCACTGAGGTCCATTATTATGTATCTCGACAAATTGACTCCTCAAGAGGTTATTGACTTAGAACTATCGACTGGGATACCGATGCTTTACATATATAAAGAGGGGCAATTCATCAGGAGGGGAAGTCCTGCGGGGCCTACAGAGGCTGGCGTTTATGCTTATAGTCCGAGTTTGGCCATTTATAGGCAAAAGTTTGATGAGATGTTGCTCTAA

Network for GWHGAAZE007885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00300.23	His_Phos_1	89	155	2.60E-16
PF00300.23	His_Phos_1	183	293	4.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01834	PGAM, gpmA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0003824	molecular_function	catalytic activity
GO:0004619	molecular_function	phosphoglycerate mutase activity
GO:0016868	molecular_function	intramolecular transferase activity, phosphotransferases

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.115
	SRR3591706	second leaf	2.776
	SRR3591707	mature leaf	4.063
	SRR3591708	Shoot apex	6.240
	SRR3591709	Stem	8.572
	SRR3591710	White floral bud	2.918
	SRR3591711	White flower	3.647
	SRR3591712	Green floral bud	5.167
	SRR3591713	Yellow flower	5.208
SRP173429	SRR8316895	Juvenile bud stage	9.633
	SRR8316896	Juvenile bud stage	10.521
	SRR8316897	Juvenile bud stage	3.653
	SRR8316894	Third green stage	3.946
	SRR8316900	Third green stage	9.441
	SRR8316901	Third green stage	9.354
	SRR8316898	Complete white stage	2.358
	SRR8316899	Complete white stage	11.919
	SRR8316903	Complete white stage	4.582
	SRR8316902	Silver flowering stage	3.092
	SRR8316904	Silver flowering stage	2.308
	SRR8316905	Silver flowering stage	1.817
	SRR8316906	Gold flowering stage	6.017
	SRR8316907	Gold flowering stage	7.652
	SRR8316908	Gold flowering stage	4.106
SRP132670	SRR6706286	Control	10.656
	SRR6706287	Light intensity 50%	11.013
	SRR6706288	Light intensity 20%	10.821
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.816
	CNS0095593	Slightly white alabastrum(diploid) 2	8.454
	CNS0095594	Slightly white alabastrum(diploid) 3	8.649
	CNS0095595	Whole white alabastrum(diploid) 2	6.555
	CNS0095596	Whole white alabastrum(diploid) 3	5.869
	CNS0095597	Whole white alabastrum(diploid) 4	7.309
	CNS0095598	Silvery flower (diploied) 1	7.269
	CNS0095599	Silvery flower (diploied) 2	4.650
	CNS0095600	Silvery flower (diploied) 3	5.583
	CNS0095601	Golden flower (diploid) 1	5.003
	CNS0095602	Golden flower (diploid) 2	6.167
	CNS0095603	Golden flower (diploid) 3	5.957
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.074
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.453
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.660
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.828
	CNS0095610	Silvery flower (diploied) 1	4.055
	CNS0095611	Silvery flower (diploied) 2	5.437
	CNS0095612	Silvery flower (diploied) 3	2.829
	CNS0095613	Golden flower (tetraploid) 1	2.579
	CNS0095614	Golden flower (tetraploid) 2	4.648
	CNS0095615	Golden flower (tetraploid) 3	2.183
CRA001975	CRR073297	Stem 1	8.447
	CRR073298	Stem 2	6.112
	CRR073299	Stem 3	5.776
	CRR073300	Leaf 1	6.324
	CRR073301	Leaf 2	4.045
	CRR073302	Leaf 3	4.070
	CRR073303	Juvenile bud 1	4.185
	CRR073304	Juvenile bud 2	2.315
	CRR073305	Juvenile bud 3	3.938
	CRR073306	Third green 1	1.409
	CRR073307	Third green 2	0.661
	CRR073308	Third green 3	1.268
	CRR073309	Second white 1	1.035
	CRR073310	Second white 2	1.395
	CRR073311	Second white 3	1.553
	CRR073312	Silver flowering 1	1.497
	CRR073313	Silver flowering 2	0.586
	CRR073314	Silver flowering 3	0.911
	CRR073315	Gold flowering 1	2.386
	CRR073316	Gold flowering 2	3.346
	CRR073317	Gold flowering 3	2.754
	CRR073318	Tawny withering 1	3.345
	CRR073319	Tawny withering 2	4.438
	CRR073320	Tawny withering 3	5.754