Detail information of GWHGAAZE007923


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010052027.19.13695E-53PREDICTED: B3 domain-containing transcription factor VRN1-like [Eucalyptus grandis]
Swissprottr|Q9FGD2|Y5698_ARATH6E-22Putative B3 domain-containing protein At5g66980
trEMBLtr|A0A059CCB4|A0A059CCB4_EUCGR2E-51Uncharacterized protein {ECO:0000313|EMBL:KCW75884.1}
TAIR10AT5G66980.14E-20AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5654833356552747-
GWHAAZE00000002mRNA5654833356552747-
GWHAAZE00000002exon5655264356552747-
GWHAAZE00000002exon5655118256551500-
GWHAAZE00000002exon5655074656550912-
GWHAAZE00000002exon5654982256550086-
GWHAAZE00000002exon5654876056548914-
GWHAAZE00000002exon5654833356548599-
GWHAAZE00000002CDS5655264356552747-
GWHAAZE00000002CDS5655118256551500-
GWHAAZE00000002CDS5655074656550912-
GWHAAZE00000002CDS5654982256550086-
GWHAAZE00000002CDS5654876056548914-
GWHAAZE00000002CDS5654833356548599-
Transcript Sequence

Network for GWHGAAZE007923

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040GO:0008097 5S rRNA binding GOslim:molecular_function
map03040 Spliceosome
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3221127.90E-16
PF02362.22B31832651.50E-15
PF02362.22B33224123.80E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.061
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.258
SRR3591709Stem0.074
SRR3591710White floral bud0.164
SRR3591711White flower0.000
SRR3591712Green floral bud0.037
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 3.523
SRR8316896Juvenile bud stage 5.553
SRR8316897Juvenile bud stage 0.711
SRR8316894Third green stage 2.534
SRR8316900Third green stage 6.478
SRR8316901Third green stage 6.683
SRR8316898Complete white stage 1.336
SRR8316899Complete white stage 7.335
SRR8316903Complete white stage 2.258
SRR8316902Silver flowering stage1.730
SRR8316904Silver flowering stage2.491
SRR8316905Silver flowering stage1.163
SRR8316906Gold flowering stage 2.961
SRR8316907Gold flowering stage 3.377
SRR8316908Gold flowering stage 0.536
SRP132670SRR6706286Control6.412
SRR6706287Light intensity 50%6.269
SRR6706288Light intensity 20%7.374
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.762
CNS0095593Slightly white alabastrum(diploid) 23.665
CNS0095594Slightly white alabastrum(diploid) 36.222
CNS0095595Whole white alabastrum(diploid) 23.897
CNS0095596Whole white alabastrum(diploid) 33.160
CNS0095597Whole white alabastrum(diploid) 42.813
CNS0095598Silvery flower (diploied) 14.234
CNS0095599Silvery flower (diploied) 22.037
CNS0095600Silvery flower (diploied) 32.546
CNS0095601Golden flower (diploid) 13.014
CNS0095602Golden flower (diploid) 22.476
CNS0095603Golden flower (diploid) 33.151
CNS0095604Slightly white alabastrum(tetraploid) 10.817
CNS0095605Slightly white alabastrum(tetraploid) 20.070
CNS0095606Slightly white alabastrum(tetraploid) 30.012
CNS0095607Whole white alabastrum(tetraploid) 10.157
CNS0095608Whole white alabastrum(tetraploid) 20.198
CNS0095609Whole white alabastrum(tetraploid) 31.264
CNS0095610Silvery flower (diploied) 10.105
CNS0095611Silvery flower (diploied) 20.098
CNS0095612Silvery flower (diploied) 30.498
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.134
CNS0095615Golden flower (tetraploid) 30.014
CRA001975CRR073297Stem 13.178
CRR073298Stem 22.902
CRR073299Stem 32.325
CRR073300Leaf 13.175
CRR073301Leaf 22.455
CRR073302Leaf 31.049
CRR073303Juvenile bud 11.644
CRR073304Juvenile bud 20.518
CRR073305Juvenile bud 31.914
CRR073306Third green 10.403
CRR073307Third green 20.061
CRR073308Third green 30.268
CRR073309Second white 10.829
CRR073310Second white 20.269
CRR073311Second white 30.104
CRR073312Silver flowering 10.362
CRR073313Silver flowering 20.111
CRR073314Silver flowering 30.570
CRR073315Gold flowering 11.510
CRR073316Gold flowering 23.083
CRR073317Gold flowering 31.901
CRR073318Tawny withering 11.589
CRR073319Tawny withering 21.905
CRR073320Tawny withering 31.680