Detail information of GWHGAAZE008006


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN75293.13.67754E-69hypothetical protein VITISV_042413 [Vitis vinifera]
Swissprottr|Q6NQG7|ATL78_ARATH8E-62RING-H2 finger protein ATL78
trEMBLtr|A5C4L5|A5C4L5_VITVI1E-69Putative uncharacterized protein {ECO:0000313|EMBL:CAN75293.1}
TAIR10AT1G49230.13E-48RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene5923243559233010-
GWHAAZE00000002mRNA5923243559233010-
GWHAAZE00000002exon5923243559233010-
GWHAAZE00000002CDS5923243559233010-
Transcript Sequence

Network for GWHGAAZE008006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2701136.00E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.777
SRR3591706second leaf0.623
SRR3591707mature leaf2.311
SRR3591708Shoot apex3.038
SRR3591709Stem10.356
SRR3591710White floral bud0.583
SRR3591711White flower0.630
SRR3591712Green floral bud2.221
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.455
SRR8316896Juvenile bud stage 0.613
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 1.570
SRR8316900Third green stage 5.693
SRR8316901Third green stage 3.764
SRR8316898Complete white stage 0.391
SRR8316899Complete white stage 8.036
SRR8316903Complete white stage 0.636
SRR8316902Silver flowering stage0.115
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control8.426
SRR6706287Light intensity 50%6.850
SRR6706288Light intensity 20%7.403
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.540
CNS0095593Slightly white alabastrum(diploid) 23.788
CNS0095594Slightly white alabastrum(diploid) 30.395
CNS0095595Whole white alabastrum(diploid) 22.304
CNS0095596Whole white alabastrum(diploid) 32.820
CNS0095597Whole white alabastrum(diploid) 40.698
CNS0095598Silvery flower (diploied) 10.256
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.063
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.098
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 13.555
CNS0095605Slightly white alabastrum(tetraploid) 22.428
CNS0095606Slightly white alabastrum(tetraploid) 38.471
CNS0095607Whole white alabastrum(tetraploid) 11.110
CNS0095608Whole white alabastrum(tetraploid) 20.470
CNS0095609Whole white alabastrum(tetraploid) 31.443
CNS0095610Silvery flower (diploied) 10.000
CNS0095611Silvery flower (diploied) 20.093
CNS0095612Silvery flower (diploied) 30.181
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.262
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 14.452
CRR073298Stem 26.268
CRR073299Stem 310.501
CRR073300Leaf 110.999
CRR073301Leaf 29.383
CRR073302Leaf 311.766
CRR073303Juvenile bud 113.099
CRR073304Juvenile bud 22.754
CRR073305Juvenile bud 310.575
CRR073306Third green 10.270
CRR073307Third green 20.120
CRR073308Third green 30.313
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.101
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.877
CRR073316Gold flowering 23.802
CRR073317Gold flowering 34.970
CRR073318Tawny withering 15.447
CRR073319Tawny withering 22.090
CRR073320Tawny withering 38.195