Gene detail

Detail information of GWHGAAZE008108

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010069331.1	1.23097E-94	PREDICTED: lysine-specific demethylase JMJ25-like [Eucalyptus grandis]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	2E-69	Lysine-specific demethylase JMJ25
trEMBL	tr\|A0A059AW35\|A0A059AW35_EUCGR	5E-95	Uncharacterized protein {ECO:0000313\|EMBL:KCW57655.1}
TAIR10	AT1G11950.1	4E-68	Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	61653386	61657838	+
GWHAAZE00000002	mRNA	61653386	61657838	+
GWHAAZE00000002	exon	61653386	61653466	+
GWHAAZE00000002	exon	61653545	61654435	+
GWHAAZE00000002	exon	61655125	61655197	+
GWHAAZE00000002	exon	61655283	61655368	+
GWHAAZE00000002	exon	61657472	61657591	+
GWHAAZE00000002	exon	61657773	61657838	+
GWHAAZE00000002	CDS	61653386	61653466	+
GWHAAZE00000002	CDS	61653545	61654435	+
GWHAAZE00000002	CDS	61655125	61655197	+
GWHAAZE00000002	CDS	61655283	61655368	+
GWHAAZE00000002	CDS	61657472	61657591	+
GWHAAZE00000002	CDS	61657773	61657838	+

Transcript Sequence
>GWHTAAZE008116 ATGTCCAACATTGATGCATGGCATCAATACCCTGATCCTGCGGCCTTGCCCAAACTATACAGCTTAAAGTTTCGGTTTCGGGTTAATGTATTGACTCATACTGAAGCAGTGACCCTTACATCTAAGCAGCTTGGTGATATAGAAAAGTTGAAAAAAAGGCACAATGCCCAGGATAAAAGGGAAATTTACACAAATGGCCAGATTCTGAATCAAACAGTTGAGAAGCAGCTCCACGGGGTTGGTGAGGAAAGGGAAGGTACAACTACAGAAAAACTTGTTGATCTAGGCGCTCAGCAACATGATATAAATATTGCATCTGAGCAGGTTCTTTTGCAAGTTTCAGAGTCAGAGGAAGGTCCGAGCTTTAAGAAAGAGGCCGTTGACCTGCAAGTATCTGATATCCAGACCAATGGACACATGCTAAGTATTGGGGTTAAGGTAGAGGGAGGCTTGCATGGTGCTGGTAATGACGAAAAAGTGGGTGACATTGGTGGCAGTGGGGAAAGTGAAGGTGGAATTGCTTCTTTATGTACATTGGGAACTGAAAACAGAAGAGATTCGAACACCATTGGTATATGTAGCGAGGCCAAAGAAGATTCTGTTTTAGTGGCAGAGGAGAATATTCCCAATGACAATGAAGAATATAGAAAAAGAAGGGAAGTTCGTAAAAATAAAAAGCGAAATTTGTCTTTGGGTTCACGTAGGAATCGTAAGAAATTGAAAGTTGAAATGCAGATGGAAGGAGAGAGAAAGGACAATGTTGATATGGTAGGTGATAGTCAGCAAAATACTTTTGAAGTAGCTTCTGAAACAGGTGAGGAGACAAAAGTGGACAGTGTAGAAGGATTTGAAGATGCAGAGTGTGGGGCTGTCTGGGACATCTTTAGGAGGCAAGATGTTCCTAAATTGGAGGAATATCTTAAAAAGCATTATAGGGAATTTAGGCATATTTATTGTTCTCCGTTGCAGCAGGTTTTTCACCCTATTCATGACCAGACGTTTTACTTAACTATGGAGCACAAAAAGAGGCTCAAGGAGGAATATGGAATTGAACCATGGACTTTCGTACAAAAGCTAGGTGATGCTGTTTTTATACCTGCTGGTTGTCCTCATCAAGTCAGAAATTTGAAGTCATGTATAAAGGTTGCACTTGACTTCGTCTCACCTGAAAATGTCCGCGAGTGCATTCGTTTGGCAGAGGAATTCCGAGTTCTACCCCAAAACCACAGGGCTAAGGAAGACAAGTTGGAGGTGAAGAAAATGTCTCTTTATGCAATTAGCCAAGCTGTGGAGGAGCTGGAGAAGTTTATTGGGTAA

Network for GWHGAAZE008108

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02373.23	JmjC	288	386	3.40E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.000
	SRR3591706	second leaf	1.884
	SRR3591707	mature leaf	1.255
	SRR3591708	Shoot apex	9.011
	SRR3591709	Stem	3.107
	SRR3591710	White floral bud	4.124
	SRR3591711	White flower	5.900
	SRR3591712	Green floral bud	4.909
	SRR3591713	Yellow flower	2.187
SRP173429	SRR8316895	Juvenile bud stage	4.556
	SRR8316896	Juvenile bud stage	5.584
	SRR8316897	Juvenile bud stage	2.445
	SRR8316894	Third green stage	2.219
	SRR8316900	Third green stage	3.298
	SRR8316901	Third green stage	4.158
	SRR8316898	Complete white stage	0.225
	SRR8316899	Complete white stage	3.614
	SRR8316903	Complete white stage	1.121
	SRR8316902	Silver flowering stage	0.207
	SRR8316904	Silver flowering stage	1.283
	SRR8316905	Silver flowering stage	0.413
	SRR8316906	Gold flowering stage	0.868
	SRR8316907	Gold flowering stage	1.010
	SRR8316908	Gold flowering stage	1.546
SRP132670	SRR6706286	Control	3.588
	SRR6706287	Light intensity 50%	3.473
	SRR6706288	Light intensity 20%	3.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.121
	CNS0095593	Slightly white alabastrum(diploid) 2	4.721
	CNS0095594	Slightly white alabastrum(diploid) 3	5.171
	CNS0095595	Whole white alabastrum(diploid) 2	4.152
	CNS0095596	Whole white alabastrum(diploid) 3	3.218
	CNS0095597	Whole white alabastrum(diploid) 4	3.776
	CNS0095598	Silvery flower (diploied) 1	5.824
	CNS0095599	Silvery flower (diploied) 2	3.945
	CNS0095600	Silvery flower (diploied) 3	3.420
	CNS0095601	Golden flower (diploid) 1	6.907
	CNS0095602	Golden flower (diploid) 2	4.008
	CNS0095603	Golden flower (diploid) 3	3.519
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.469
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.003
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.363
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.500
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.053
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.029
	CNS0095610	Silvery flower (diploied) 1	2.641
	CNS0095611	Silvery flower (diploied) 2	3.681
	CNS0095612	Silvery flower (diploied) 3	1.858
	CNS0095613	Golden flower (tetraploid) 1	1.101
	CNS0095614	Golden flower (tetraploid) 2	3.295
	CNS0095615	Golden flower (tetraploid) 3	1.501
CRA001975	CRR073297	Stem 1	7.081
	CRR073298	Stem 2	5.770
	CRR073299	Stem 3	5.765
	CRR073300	Leaf 1	3.724
	CRR073301	Leaf 2	3.323
	CRR073302	Leaf 3	1.976
	CRR073303	Juvenile bud 1	1.634
	CRR073304	Juvenile bud 2	1.196
	CRR073305	Juvenile bud 3	1.707
	CRR073306	Third green 1	0.352
	CRR073307	Third green 2	0.130
	CRR073308	Third green 3	0.242
	CRR073309	Second white 1	0.264
	CRR073310	Second white 2	0.721
	CRR073311	Second white 3	0.264
	CRR073312	Silver flowering 1	0.378
	CRR073313	Silver flowering 2	0.193
	CRR073314	Silver flowering 3	0.179
	CRR073315	Gold flowering 1	0.948
	CRR073316	Gold flowering 2	0.308
	CRR073317	Gold flowering 3	0.266
	CRR073318	Tawny withering 1	0.979
	CRR073319	Tawny withering 2	2.047
	CRR073320	Tawny withering 3	1.420