Gene detail

Detail information of GWHGAAZE008139

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010246832.1	0	PREDICTED: protein RRP45A-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q9M209\|CER7_ARATH	6E-154	Protein ECERIFERUM 7
trEMBL	tr\|A0A068V339\|A0A068V339_COFCA	1E-178	Coffea canephora DH200=94 genomic scaffold, scaffold_94 {ECO:0000313\|EMBL:CDP15071.1}
TAIR10	AT3G60500.3	2E-124	3'-5'-exoribonuclease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62458762	62461559	+
GWHAAZE00000002	mRNA	62458762	62461559	+
GWHAAZE00000002	exon	62458762	62458904	+
GWHAAZE00000002	exon	62459672	62459881	+
GWHAAZE00000002	exon	62460437	62460532	+
GWHAAZE00000002	exon	62460636	62460750	+
GWHAAZE00000002	exon	62461133	62461213	+
GWHAAZE00000002	exon	62461323	62461559	+
GWHAAZE00000002	CDS	62458762	62458904	+
GWHAAZE00000002	CDS	62459672	62459881	+
GWHAAZE00000002	CDS	62460437	62460532	+
GWHAAZE00000002	CDS	62460636	62460750	+
GWHAAZE00000002	CDS	62461133	62461213	+
GWHAAZE00000002	CDS	62461323	62461559	+

Transcript Sequence
>GWHTAAZE008147 GACATAATGGAGCAAAGACTAGCTAATACCTGGAGGATTACAGTGAATGAGAAGAAATTCATAGAGACTGCATTACTTTCTGACCTAAGAGTTGATGGTCGGCGTCCATTTGACTATAGACGACTAACTATCATGTTTGGTAGGGAAGATGGCTCAGCTGAGGTGCAGCTTGGCCAAACTCATGTTATGGGTTTTGTCACCGGCCAATTAGTTCAACCTTATAGAGACAGGCCGAATGAGGGGACACTTTCAATCTATACTGAGTTCTCTCCAATGGCTGATCCTTCATTTGAGGCAGGTCGTCCTGGAGAATCTGCTGTGGAATTGGGACGCATTATAGATCGTGGTTTAAGGGAAAGCAGAGCAGTGGACACAGAATCACTTTGTGTTGTTGCAGGGAAGTTTGTATGGTCCATCCGTATTGATCTTCATATTCTAGACAATGGGGGAAATCTTGTTGATGCTGCCAATATTGCTGCTTTGGCATCTCTCTCTACGTTCCGGAGGCCTGAATGTACACTAGGAGGAGAAGATGGCCAGGAAGTGATCGTACATCCACCTGAAGTAAGGGAGCCTCTTCCGTTGATAATACATCATCTCCCTGTGGCTGTAACCTTTGCATTTTTTGGTAAAGACAACATTGTGGTGATTGATCCTACCCATTATGAAGAGGCTGTCATGGGAGGAAGAATGACCGCTACACTTAATACGAATGGTGATGTTTGTGCTATTCAAAAAGCTGGAGGAGAGGGTGTTATGCAAAGTGTTATCATGCAGTGTTTGCGTATAGCTTCTGTGAAGGCTGGCGATATAACAACGAAGATAAAGAATGCTGTGAGTTTGTTGGAAGCGACGTTTCTTGTACATTGTGTTAAATATTAA

Network for GWHGAAZE008139

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	39	170	2.10E-21
PF03725.16	RNase_PH_C	199	265	8.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03678	RRP45, EXOSC9	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0000178	cellular_component	exosome (RNase complex)

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.089
	SRR3591706	second leaf	6.017
	SRR3591707	mature leaf	5.491
	SRR3591708	Shoot apex	9.495
	SRR3591709	Stem	6.271
	SRR3591710	White floral bud	9.493
	SRR3591711	White flower	9.301
	SRR3591712	Green floral bud	10.607
	SRR3591713	Yellow flower	9.672
SRP173429	SRR8316895	Juvenile bud stage	9.395
	SRR8316896	Juvenile bud stage	11.624
	SRR8316897	Juvenile bud stage	5.750
	SRR8316894	Third green stage	5.265
	SRR8316900	Third green stage	15.627
	SRR8316901	Third green stage	13.679
	SRR8316898	Complete white stage	4.097
	SRR8316899	Complete white stage	18.193
	SRR8316903	Complete white stage	9.191
	SRR8316902	Silver flowering stage	3.455
	SRR8316904	Silver flowering stage	4.281
	SRR8316905	Silver flowering stage	2.793
	SRR8316906	Gold flowering stage	12.734
	SRR8316907	Gold flowering stage	9.773
	SRR8316908	Gold flowering stage	10.071
SRP132670	SRR6706286	Control	16.914
	SRR6706287	Light intensity 50%	17.155
	SRR6706288	Light intensity 20%	19.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.905
	CNS0095593	Slightly white alabastrum(diploid) 2	7.644
	CNS0095594	Slightly white alabastrum(diploid) 3	6.921
	CNS0095595	Whole white alabastrum(diploid) 2	6.235
	CNS0095596	Whole white alabastrum(diploid) 3	7.118
	CNS0095597	Whole white alabastrum(diploid) 4	4.955
	CNS0095598	Silvery flower (diploied) 1	6.309
	CNS0095599	Silvery flower (diploied) 2	7.413
	CNS0095600	Silvery flower (diploied) 3	10.541
	CNS0095601	Golden flower (diploid) 1	5.230
	CNS0095602	Golden flower (diploid) 2	11.075
	CNS0095603	Golden flower (diploid) 3	10.834
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.998
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.666
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.827
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.491
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.856
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.185
	CNS0095610	Silvery flower (diploied) 1	13.797
	CNS0095611	Silvery flower (diploied) 2	15.039
	CNS0095612	Silvery flower (diploied) 3	15.930
	CNS0095613	Golden flower (tetraploid) 1	8.011
	CNS0095614	Golden flower (tetraploid) 2	10.425
	CNS0095615	Golden flower (tetraploid) 3	15.319
CRA001975	CRR073297	Stem 1	15.914
	CRR073298	Stem 2	15.089
	CRR073299	Stem 3	17.372
	CRR073300	Leaf 1	18.849
	CRR073301	Leaf 2	16.066
	CRR073302	Leaf 3	17.032
	CRR073303	Juvenile bud 1	12.159
	CRR073304	Juvenile bud 2	13.524
	CRR073305	Juvenile bud 3	17.158
	CRR073306	Third green 1	4.236
	CRR073307	Third green 2	4.044
	CRR073308	Third green 3	5.059
	CRR073309	Second white 1	7.435
	CRR073310	Second white 2	10.662
	CRR073311	Second white 3	7.442
	CRR073312	Silver flowering 1	6.487
	CRR073313	Silver flowering 2	3.547
	CRR073314	Silver flowering 3	3.746
	CRR073315	Gold flowering 1	8.137
	CRR073316	Gold flowering 2	12.582
	CRR073317	Gold flowering 3	9.593
	CRR073318	Tawny withering 1	11.237
	CRR073319	Tawny withering 2	11.438
	CRR073320	Tawny withering 3	10.084