Detail information of GWHGAAZE008179


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACQ76787.10lipoxygenase [Camellia sinensis]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|C4NZX3|C4NZX3_CAMSI0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT3G45140.16E-146lipoxygenase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6419618364199571-
GWHAAZE00000002mRNA6419618364199571-
GWHAAZE00000002exon6419618364196401-
GWHAAZE00000002exon6419647664196600-
GWHAAZE00000002exon6419716064197500-
GWHAAZE00000002exon6419827164198453-
GWHAAZE00000002exon6419927064199571-
GWHAAZE00000002CDS6419927064199571-
GWHAAZE00000002CDS6419827164198453-
GWHAAZE00000002CDS6419716064197500-
GWHAAZE00000002CDS6419647664196600-
GWHAAZE00000002CDS6419618364196401-
Transcript Sequence

Network for GWHGAAZE008179

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0044map00591 Linoleic acid metabolism
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function
map00592 alpha-Linolenic acid metabolism
GO:0046872 metal ion binding GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process
map01110 Biosynthesis of secondary metabolites
map01100 Metabolic pathways


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00305.20Lipoxygenase21621.10E-80
PF00305.20Lipoxygenase1623165.00E-74
PF00305.20Lipoxygenase3203721.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.913
SRR3591706second leaf3.229
SRR3591707mature leaf0.893
SRR3591708Shoot apex13.703
SRR3591709Stem1.346
SRR3591710White floral bud36.711
SRR3591711White flower27.604
SRR3591712Green floral bud72.021
SRR3591713Yellow flower11.836
SRP173429 SRR8316895Juvenile bud stage 28.831
SRR8316896Juvenile bud stage 43.774
SRR8316897Juvenile bud stage 4.245
SRR8316894Third green stage 15.732
SRR8316900Third green stage 12.595
SRR8316901Third green stage 15.719
SRR8316898Complete white stage 1.660
SRR8316899Complete white stage 2.280
SRR8316903Complete white stage 1.366
SRR8316902Silver flowering stage0.797
SRR8316904Silver flowering stage1.190
SRR8316905Silver flowering stage0.642
SRR8316906Gold flowering stage 1.204
SRR8316907Gold flowering stage 2.131
SRR8316908Gold flowering stage 0.424
SRP132670SRR6706286Control25.053
SRR6706287Light intensity 50%20.156
SRR6706288Light intensity 20%16.956
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.226
CNS0095593Slightly white alabastrum(diploid) 23.562
CNS0095594Slightly white alabastrum(diploid) 38.125
CNS0095595Whole white alabastrum(diploid) 23.488
CNS0095596Whole white alabastrum(diploid) 35.137
CNS0095597Whole white alabastrum(diploid) 42.476
CNS0095598Silvery flower (diploied) 111.930
CNS0095599Silvery flower (diploied) 23.162
CNS0095600Silvery flower (diploied) 33.075
CNS0095601Golden flower (diploid) 15.927
CNS0095602Golden flower (diploid) 26.204
CNS0095603Golden flower (diploid) 35.161
CNS0095604Slightly white alabastrum(tetraploid) 111.741
CNS0095605Slightly white alabastrum(tetraploid) 213.022
CNS0095606Slightly white alabastrum(tetraploid) 323.355
CNS0095607Whole white alabastrum(tetraploid) 10.659
CNS0095608Whole white alabastrum(tetraploid) 20.164
CNS0095609Whole white alabastrum(tetraploid) 39.363
CNS0095610Silvery flower (diploied) 11.221
CNS0095611Silvery flower (diploied) 23.216
CNS0095612Silvery flower (diploied) 35.479
CNS0095613Golden flower (tetraploid) 10.562
CNS0095614Golden flower (tetraploid) 20.579
CNS0095615Golden flower (tetraploid) 32.517
CRA001975CRR073297Stem 182.295
CRR073298Stem 276.533
CRR073299Stem 362.291
CRR073300Leaf 110.332
CRR073301Leaf 216.415
CRR073302Leaf 315.735
CRR073303Juvenile bud 11.474
CRR073304Juvenile bud 24.994
CRR073305Juvenile bud 32.275
CRR073306Third green 11.052
CRR073307Third green 20.238
CRR073308Third green 30.415
CRR073309Second white 10.090
CRR073310Second white 20.327
CRR073311Second white 30.017
CRR073312Silver flowering 10.131
CRR073313Silver flowering 20.013
CRR073314Silver flowering 30.108
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.143
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.140
CRR073320Tawny withering 30.000