Gene detail

Detail information of GWHGAAZE008223

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACJ54281.1	0	lipoxygenase [Camellia sinensis]
Swissprot	tr\|O24370\|LOX21_SOLTU	0	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|B7TZ47\|B7TZ47_CAMSI	0	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	7E-152	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	65560667	65563877	-
GWHAAZE00000002	mRNA	65560667	65563877	-
GWHAAZE00000002	exon	65560667	65561078	-
GWHAAZE00000002	exon	65561476	65561739	-
GWHAAZE00000002	exon	65562141	65562148	-
GWHAAZE00000002	exon	65562265	65562539	-
GWHAAZE00000002	exon	65562767	65562902	-
GWHAAZE00000002	exon	65563291	65563376	-
GWHAAZE00000002	exon	65563700	65563877	-
GWHAAZE00000002	CDS	65563700	65563877	-
GWHAAZE00000002	CDS	65563291	65563376	-
GWHAAZE00000002	CDS	65562767	65562902	-
GWHAAZE00000002	CDS	65562265	65562539	-
GWHAAZE00000002	CDS	65562141	65562148	-
GWHAAZE00000002	CDS	65561476	65561739	-
GWHAAZE00000002	CDS	65560667	65561078	-

Transcript Sequence
>GWHTAAZE008231 ATGTTAACTGACCATGAATTTCAATACTTCACGGCCATTGACACGCTGTTTAACGAAGGGATTCATTTGCCGATCCAAAGCAAACAGACTCTCGAAAATCTTCCACTTCGAATCATCAAAGCAATTGGGGATACAGAAAAGTGTCTTTTGCGCTTCGAGACCCCTCAAATGACCAGCAGAGATCATTTTTCATGGATTAGAGATGAGGAATTTTGTCGACAAACACTAGCTGGTCTCAACCCGTATAGTATACAGTTGGTCACGGAATGGCCATTGAAAAGTAAGCTCGACCCAGAGGAATATGGTCCACCTGAATCAGAAATCACCAAGGAATTGGTTGAGCAACAAATCAAAGGTGTCATGACCCTTGAGGAGGTAATCCTAAAATCCATCAAAGTTTATTACCATGATTTACTCTTGCCATATGTGAAATACGTAAGAGATATTGAAGGGACAACTCTTTACGGCTCGAGTACACTTATGTTCCTAAACCAAAGCGAAGAGCTATTGCCGGTAGCCATTGAGCTAACTCGACCACAGGCCAATAAGCAACCCCAATGGAAGAAAGTGTTCACACCCTCCTCGGAAGCCACTGGTGCTTGGCTTTGGAAGGTGGCCAAGGCTCACGTCCTTGCTCATGACTCTGGTTATCATCAGCTCGTTAGCCACTGGCAGAAATTCTGGCTAAGGACGCATTGTGTGACAGAGCCTTACATAATTGCGACTAATCGACAACTTAGTGCAATGCACCCCATTCACAGGCTATTGCGCCCTTATCTCTGTTACCTAATGGAGATAAATGCTCTTGCTCGATTTGCCCTAATCAATGCAGATGGAGTAATTGAGTCATCGTTCTCACCTCGAAAATACTCAATGGAGCTTAGCTCGGTTGCCTATGAACAATGGCGATTTGACCTACAGGCACTACCAGCAGACCTTTTTAGCAGGGGAATGGCTGTGGAAGATCCAAATGCTCCACATGGTCTAAAGCTTGCAATTGAAGACTATCCCTTTGCTGCTGACGGTTTAATCATTTGGGACGCCATTAAACAATGGGTAACTGACTATGTAAACTACTACTACACAGACGCGAACTTAGTAGAATCTGATGAAGAATTCCAGGGATGGTGGACAGAAATTCGAACAGTCGGCCATGGAGACAAAAAGGACGAACCATGGTGGCCTGTGCTTAAAACACCAGAAGACTTAATCGGCATCCTCACAACAATAATATGGGTAACATCTGGTCACCATTCAGCGGTCATGATTTCGCAGGTTATTTCCCAAATAGACCTAGCATTGCTCGAATTAAGATGCCTAACGAGGATCCAACCGACGAAGAGTGGACAAGATTTTTGA

Network for GWHGAAZE008223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	4	425	2.20E-188

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.098
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	2.025
	SRR8316897	Juvenile bud stage	0.140
	SRR8316894	Third green stage	2.141
	SRR8316900	Third green stage	1.184
	SRR8316901	Third green stage	3.124
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.097
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.019
SRP132670	SRR6706286	Control	0.748
	SRR6706287	Light intensity 50%	0.977
	SRR6706288	Light intensity 20%	0.464
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.491
	CNS0095593	Slightly white alabastrum(diploid) 2	1.275
	CNS0095594	Slightly white alabastrum(diploid) 3	1.407
	CNS0095595	Whole white alabastrum(diploid) 2	0.515
	CNS0095596	Whole white alabastrum(diploid) 3	1.496
	CNS0095597	Whole white alabastrum(diploid) 4	0.179
	CNS0095598	Silvery flower (diploied) 1	0.028
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.813
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.541
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.139
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.166
	CNS0095610	Silvery flower (diploied) 1	0.004
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.095
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.249
	CRR073298	Stem 2	1.912
	CRR073299	Stem 3	0.302
	CRR073300	Leaf 1	1.014
	CRR073301	Leaf 2	3.966
	CRR073302	Leaf 3	0.440
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.004
	CRR073306	Third green 1	0.031
	CRR073307	Third green 2	0.005
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.009
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000