Gene detail

Detail information of GWHGAAZE008229

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004295226.1	0	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|O24370\|LOX21_SOLTU	0	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|A0A061GSW1\|A0A061GSW1_THECC	0	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	1E-177	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	65759720	65766655	+
GWHAAZE00000002	mRNA	65759720	65766655	+
GWHAAZE00000002	exon	65759720	65759839	+
GWHAAZE00000002	exon	65760296	65760533	+
GWHAAZE00000002	exon	65760731	65761042	+
GWHAAZE00000002	exon	65761244	65761329	+
GWHAAZE00000002	exon	65763269	65763468	+
GWHAAZE00000002	exon	65764235	65764498	+
GWHAAZE00000002	exon	65765405	65765757	+
GWHAAZE00000002	exon	65766360	65766655	+
GWHAAZE00000002	CDS	65759720	65759839	+
GWHAAZE00000002	CDS	65760296	65760533	+
GWHAAZE00000002	CDS	65760731	65761042	+
GWHAAZE00000002	CDS	65761244	65761329	+
GWHAAZE00000002	CDS	65763269	65763468	+
GWHAAZE00000002	CDS	65764235	65764498	+
GWHAAZE00000002	CDS	65765405	65765757	+
GWHAAZE00000002	CDS	65766360	65766655	+

Transcript Sequence
>GWHTAAZE008237 ACTGGATTAGAGAAGGAAACAGTAAAAGAGGAAGCTACAGGGATCAGAGATGGGGATGAGGTGAAGTTTGAGGCAACGTTTGCAGTTCCATTGGATTTTGGAGAGATTGGTGCAGTGATATCATATTTGCCATCCGAAACACCATCTGGGGTGAGGCGGTTGAGAGAGACAGAGCTCCGGATTCTGCAAGGTGATGGCGGTGGAGAGCGCAAAAAATTTGAAAGAATTTATGATTATGATGTCTATAATGATCTCGGAGAACCTGACGCTAATAGTAACTTATCAAGACCAGTATTAGGTGGCACGGAGTACGCATACCCGAGACGTTGCAGAACAGGTCGCCCACGCTGCAAGACAGATCCATTATCAGAGTTGAGGACTCCTAAAGAGATTTACCTGCCGAGGGATGAAGAATTTTCAGAGGTGAAAAGTCACTCACTATTAAAATCGGAAAGTTTGGGCCCAATTGTAAATGTAAACGCACGTTCTCTCATTGTGGAGGGTCCGATGGGTGAAAAATTCCCCTGCTTCACAAAAATCGACACACTTTTTGCGGAAAAGATCAATGTCGAAGATGGAACGAACTGGAAACAATATATTCTTTCCAAGGCCAAAAAGTTTATAAGTGCTGTGGAGTCTCCCGGCTTTGAGATCCCTCAATTGATGACCAGAGACAGATTTTCTTGGCATAGGGATGAGGAATTTTGTCGACAAACACTAGCTGGTGTCAACCCATGCAGTATACAGTTGGTGCAGGCACTAGAGCAAGGGAAGCTATTCATTCTAGATTACCATGATCTACTCTTACAATATGTGAACAAAGTAAGAGACATTGAGGGGACAACTCTATATGGTTCAAGGACAATAATGTTCCTAAAGCCTACCGAAGAGTTGATACCGGTAGCCATCGAGTTAACTCGCCCACCAGCTAATAATGAACCTCAATGGAAACAAGTGCTAAGAACACATTGTGTGACAGAGCCCTATATAATTGCGAGCAATCGTCAACTTAGTGCAATGCACCCAATCTATAGACTATTACATCCCCATTTTCGATATACAATGGCGATTAATGCCAAAGCTCGACAATATCTCATAAATGCAAATGGAATCATCGAGATGGCATTTTCACCTGGAAAGTACTCTATGGAACTAAGCTCTATTGCCTATGACCAGTGTCACTTTGTTTTCCAGGGACTTCCGGCAGATTTATTAGTCAGGGGAATGGCTAAAGAAGATTCAACTGCTCCCCATGGCCTAAAGCTTGCAATTGAAGACTATCCCTTTGCTAGCGATGGTTTGCTCCTTTGGGATGCCATTAAAGAATGGGTTACTAGCTACGTTAACTACTACTACACCTACCCGGATGCGAGATTGGTGAAATCGGACAGCGAGCTCCAAGCATGGTGGACAGAAATTCGAACAGTAGGCCACGGTGACAAAAAGGACGATCCATTGTGGCCTGATCTTAATACCCCAAAAGATCTTATCGAAATCGTCACAATTATGATATGGGTAACATCGGGCCATCATGCAGCTGTCAACTACGGACAATATGATTTTGCAGGTACCGTTCGTCAAGCAACGCTTGTTATTGCTGTTTTGGACGGGTTATCGACTCATTCTAAAGATGAAGAGTACATTGGTCAGTGCATTGAGCCATCTTGGGAAGAAAATCAAATTCTGATGTCAGCCTTTCAAACATTTACCTCAAGGTTGAGGGATCTCAAAGACACTATAGACGGGAGAAACGTCGATAAAAAATTGAAGAATAGAACTGGAGCTGGCCTCATACCATATGAGCTTTTTATACCAACTTCAAAAGAAGGGGTCACCGGACAAGGAGTTCCCAATAGTATCTCGATTTGA

Network for GWHGAAZE008229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	51	253	1.90E-58
PF00305.20	Lipoxygenase	252	320	1.80E-22
PF00305.20	Lipoxygenase	320	525	2.50E-108
PF00305.20	Lipoxygenase	526	605	2.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.027
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.098
	SRR3591711	White flower	0.411
	SRR3591712	Green floral bud	0.364
	SRR3591713	Yellow flower	3.971
SRP173429	SRR8316895	Juvenile bud stage	0.011
	SRR8316896	Juvenile bud stage	0.070
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.017
	SRR8316901	Third green stage	0.024
	SRR8316898	Complete white stage	0.004
	SRR8316899	Complete white stage	0.048
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.011
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.014
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.077
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	0.151
	SRR6706287	Light intensity 50%	0.182
	SRR6706288	Light intensity 20%	0.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.152
	CNS0095593	Slightly white alabastrum(diploid) 2	0.178
	CNS0095594	Slightly white alabastrum(diploid) 3	0.007
	CNS0095595	Whole white alabastrum(diploid) 2	0.015
	CNS0095596	Whole white alabastrum(diploid) 3	0.013
	CNS0095597	Whole white alabastrum(diploid) 4	0.015
	CNS0095598	Silvery flower (diploied) 1	0.009
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.013
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.019
	CNS0095610	Silvery flower (diploied) 1	0.003
	CNS0095611	Silvery flower (diploied) 2	0.025
	CNS0095612	Silvery flower (diploied) 3	0.081
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.195
	CRR073298	Stem 2	0.050
	CRR073299	Stem 3	0.062
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.089
	CRR073302	Leaf 3	0.012
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.013
	CRR073305	Juvenile bud 3	0.016
	CRR073306	Third green 1	0.001
	CRR073307	Third green 2	0.013
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.058
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.018
	CRR073317	Gold flowering 3	0.162
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000