Detail information of GWHGAAZE008231


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADO51752.10lipoxygenase [Camellia sinensis]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|E3UIM5|E3UIM5_CAMSI0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT3G45140.10lipoxygenase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6584907765857286+
GWHAAZE00000002mRNA6584907765857286+
GWHAAZE00000002exon6584907765849373+
GWHAAZE00000002exon6584945665849516+
GWHAAZE00000002exon6585057765850842+
GWHAAZE00000002exon6585160665851843+
GWHAAZE00000002exon6585204065852354+
GWHAAZE00000002exon6585244365852528+
GWHAAZE00000002exon6585291965853029+
GWHAAZE00000002exon6585387865854179+
GWHAAZE00000002exon6585499465855255+
GWHAAZE00000002exon6585595065856289+
GWHAAZE00000002exon6585686865857286+
GWHAAZE00000002CDS6584907765849373+
GWHAAZE00000002CDS6584945665849516+
GWHAAZE00000002CDS6585057765850842+
GWHAAZE00000002CDS6585160665851843+
GWHAAZE00000002CDS6585204065852354+
GWHAAZE00000002CDS6585244365852528+
GWHAAZE00000002CDS6585291965853029+
GWHAAZE00000002CDS6585387865854179+
GWHAAZE00000002CDS6585499465855255+
GWHAAZE00000002CDS6585595065856289+
GWHAAZE00000002CDS6585686865857286+
Transcript Sequence

Network for GWHGAAZE008231

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0044map00591 Linoleic acid metabolism
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function
map00592 alpha-Linolenic acid metabolism
GO:0046872 metal ion binding GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process
map01110 Biosynthesis of secondary metabolites
map01100 Metabolic pathways


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01477.24PLAT1432052.70E-07
PF00305.20Lipoxygenase2198819.10E-277
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding
GO:0005515molecular_functionprotein binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.634
SRR3591706second leaf5.995
SRR3591707mature leaf1.908
SRR3591708Shoot apex16.828
SRR3591709Stem2.912
SRR3591710White floral bud62.830
SRR3591711White flower51.509
SRR3591712Green floral bud90.862
SRR3591713Yellow flower21.240
SRP173429 SRR8316895Juvenile bud stage 75.433
SRR8316896Juvenile bud stage 112.499
SRR8316897Juvenile bud stage 19.209
SRR8316894Third green stage 38.224
SRR8316900Third green stage 40.478
SRR8316901Third green stage 37.146
SRR8316898Complete white stage 4.155
SRR8316899Complete white stage 6.734
SRR8316903Complete white stage 7.238
SRR8316902Silver flowering stage2.487
SRR8316904Silver flowering stage3.725
SRR8316905Silver flowering stage1.654
SRR8316906Gold flowering stage 3.062
SRR8316907Gold flowering stage 6.997
SRR8316908Gold flowering stage 1.536
SRP132670SRR6706286Control108.332
SRR6706287Light intensity 50%74.866
SRR6706288Light intensity 20%64.665
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.720
CNS0095593Slightly white alabastrum(diploid) 210.880
CNS0095594Slightly white alabastrum(diploid) 322.274
CNS0095595Whole white alabastrum(diploid) 27.023
CNS0095596Whole white alabastrum(diploid) 310.926
CNS0095597Whole white alabastrum(diploid) 44.967
CNS0095598Silvery flower (diploied) 130.212
CNS0095599Silvery flower (diploied) 212.306
CNS0095600Silvery flower (diploied) 38.818
CNS0095601Golden flower (diploid) 119.851
CNS0095602Golden flower (diploid) 216.866
CNS0095603Golden flower (diploid) 317.987
CNS0095604Slightly white alabastrum(tetraploid) 119.733
CNS0095605Slightly white alabastrum(tetraploid) 224.204
CNS0095606Slightly white alabastrum(tetraploid) 348.219
CNS0095607Whole white alabastrum(tetraploid) 11.414
CNS0095608Whole white alabastrum(tetraploid) 20.743
CNS0095609Whole white alabastrum(tetraploid) 318.346
CNS0095610Silvery flower (diploied) 12.091
CNS0095611Silvery flower (diploied) 29.170
CNS0095612Silvery flower (diploied) 313.692
CNS0095613Golden flower (tetraploid) 10.920
CNS0095614Golden flower (tetraploid) 21.794
CNS0095615Golden flower (tetraploid) 37.056
CRA001975CRR073297Stem 1229.353
CRR073298Stem 2231.401
CRR073299Stem 3155.616
CRR073300Leaf 128.306
CRR073301Leaf 242.777
CRR073302Leaf 343.424
CRR073303Juvenile bud 13.201
CRR073304Juvenile bud 214.279
CRR073305Juvenile bud 34.996
CRR073306Third green 11.811
CRR073307Third green 20.811
CRR073308Third green 31.341
CRR073309Second white 11.031
CRR073310Second white 20.374
CRR073311Second white 30.416
CRR073312Silver flowering 10.299
CRR073313Silver flowering 20.138
CRR073314Silver flowering 30.019
CRR073315Gold flowering 10.270
CRR073316Gold flowering 20.006
CRR073317Gold flowering 30.349
CRR073318Tawny withering 10.357
CRR073319Tawny withering 20.316
CRR073320Tawny withering 30.000