Detail information of GWHGAAZE008276


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADO51752.10lipoxygenase [Camellia sinensis]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|Q8W418|Q8W418_CITJA0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT3G45140.10lipoxygenase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6825336868261523-
GWHAAZE00000002mRNA6825336868261523-
GWHAAZE00000002exon6825336868253786-
GWHAAZE00000002exon6825439968254738-
GWHAAZE00000002exon6825544968255707-
GWHAAZE00000002exon6825699968257165-
GWHAAZE00000002exon6825815768258267-
GWHAAZE00000002exon6825865468258739-
GWHAAZE00000002exon6825910968259195-
GWHAAZE00000002exon6825939568259632-
GWHAAZE00000002exon6825991868260219-
GWHAAZE00000002exon6826125068261523-
GWHAAZE00000002CDS6826125068261523-
GWHAAZE00000002CDS6825991868260219-
GWHAAZE00000002CDS6825939568259632-
GWHAAZE00000002CDS6825910968259195-
GWHAAZE00000002CDS6825865468258739-
GWHAAZE00000002CDS6825815768258267-
GWHAAZE00000002CDS6825699968257165-
GWHAAZE00000002CDS6825544968255707-
GWHAAZE00000002CDS6825439968254738-
GWHAAZE00000002CDS6825336868253786-
Transcript Sequence

Network for GWHGAAZE008276

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01477.24PLAT1151775.60E-07
PF00305.20Lipoxygenase2022983.00E-39
PF00305.20Lipoxygenase3003652.60E-21
PF00305.20Lipoxygenase3647424.80E-186
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding
GO:0005515molecular_functionprotein binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.031
SRR3591707mature leaf0.061
SRR3591708Shoot apex0.061
SRR3591709Stem0.021
SRR3591710White floral bud3.477
SRR3591711White flower97.570
SRR3591712Green floral bud0.018
SRR3591713Yellow flower82.730
SRP173429 SRR8316895Juvenile bud stage 0.025
SRR8316896Juvenile bud stage 0.061
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.022
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.015
SRR8316898Complete white stage 0.018
SRR8316899Complete white stage 0.008
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage19.956
SRR8316904Silver flowering stage38.824
SRR8316905Silver flowering stage18.737
SRR8316906Gold flowering stage 55.641
SRR8316907Gold flowering stage 62.730
SRR8316908Gold flowering stage 23.735
SRP132670SRR6706286Control0.032
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.015
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.005
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.035
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.013
CNS0095597Whole white alabastrum(diploid) 40.008
CNS0095598Silvery flower (diploied) 10.462
CNS0095599Silvery flower (diploied) 20.571
CNS0095600Silvery flower (diploied) 34.528
CNS0095601Golden flower (diploid) 10.619
CNS0095602Golden flower (diploid) 22.817
CNS0095603Golden flower (diploid) 32.215
CNS0095604Slightly white alabastrum(tetraploid) 10.031
CNS0095605Slightly white alabastrum(tetraploid) 20.020
CNS0095606Slightly white alabastrum(tetraploid) 30.123
CNS0095607Whole white alabastrum(tetraploid) 10.002
CNS0095608Whole white alabastrum(tetraploid) 20.020
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (diploied) 12.241
CNS0095611Silvery flower (diploied) 25.357
CNS0095612Silvery flower (diploied) 3162.589
CNS0095613Golden flower (tetraploid) 131.101
CNS0095614Golden flower (tetraploid) 24.706
CNS0095615Golden flower (tetraploid) 326.237
CRA001975CRR073297Stem 10.128
CRR073298Stem 20.142
CRR073299Stem 30.092
CRR073300Leaf 10.088
CRR073301Leaf 20.088
CRR073302Leaf 30.166
CRR073303Juvenile bud 10.058
CRR073304Juvenile bud 20.040
CRR073305Juvenile bud 30.001
CRR073306Third green 138.330
CRR073307Third green 214.089
CRR073308Third green 327.335
CRR073309Second white 127.208
CRR073310Second white 274.466
CRR073311Second white 370.680
CRR073312Silver flowering 146.650
CRR073313Silver flowering 234.967
CRR073314Silver flowering 336.317
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.046
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000