Gene detail

Detail information of GWHGAAZE008278

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010930111.1	1.18273E-65	PREDICTED: lipoxygenase 6, chloroplastic isoform X2 [Elaeis guineensis]
Swissprot	tr\|O24370\|LOX21_SOLTU	5E-54	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|M4E187\|M4E187_BRARP	3E-76	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra022535.1-P}
TAIR10	AT3G45140.1	9E-40	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	68349475	68362151	+
GWHAAZE00000002	mRNA	68349475	68362151	+
GWHAAZE00000002	exon	68349475	68349748	+
GWHAAZE00000002	exon	68350810	68350920	+
GWHAAZE00000002	exon	68351567	68351631	+
GWHAAZE00000002	exon	68352256	68352336	+
GWHAAZE00000002	exon	68352685	68352795	+
GWHAAZE00000002	exon	68353839	68354020	+
GWHAAZE00000002	exon	68355760	68355836	+
GWHAAZE00000002	exon	68355912	68356083	+
GWHAAZE00000002	exon	68361956	68362151	+
GWHAAZE00000002	CDS	68349475	68349748	+
GWHAAZE00000002	CDS	68350810	68350920	+
GWHAAZE00000002	CDS	68351567	68351631	+
GWHAAZE00000002	CDS	68352256	68352336	+
GWHAAZE00000002	CDS	68352685	68352795	+
GWHAAZE00000002	CDS	68353839	68354020	+
GWHAAZE00000002	CDS	68355760	68355836	+
GWHAAZE00000002	CDS	68355912	68356083	+
GWHAAZE00000002	CDS	68361956	68362151	+

Transcript Sequence
>GWHTAAZE008286 ATGATAAGCATATTAGCTCCATCATTGATGAAGCTAGGGTTACTAGCCCTAGTGGTAAAGCTGTTTTTACAGACCCCATTACTCGGGTGGCTACTCGCTAGCCCAAGTCCTAGTAACGAGAGGTCTATTGTTAATGGAAATATTTTCTTACCGCCCGATAAATCTACTATTAAAGCTGTCGTTAGCACGAAATTTAATCAAAATCAACTCAAGCGGTTAAATTCTATGATAGCAAAACTCACGTTGGAGATTGTTCCTGCAGAGATTGACCCAAGGACTGGATTAGAGAAGGAAACAGTAAAAGAGGAAGCTAAAGGAATCAGAGATGGGGATGAGGTGAAGTTTGAGGCAACGTTTGAAGTTCCATTGGATTTTGGAGAGACTGTATTCGGTGGCACGGAGTATGCATACCGAGACGTTGCAGAACAGGTCGCCCACGGTGCAAGACAGGAGACAGATTTTCTTGGCATAGGGATGAGGAATTTTGTCACGCTAGCTGGTCTCAACCCATGTAGTATCCAGTTGTTGCAGGAATGGCCATTGAGAAGTAAGCTGGACCCTGAGGTGTATGGACCGCCTGAATCAGCCATCACCAAAGAGATTGTGGAGGAACAGATAAAAGATTTCATGACCTTTGAAGAGCCTACCGAAGAGTTGATGACGGTAGCCATTGAATTAACTAGGCCACCATCTAATAAACAACCTCAATGGAAACAAGTGTTTACACCCTCCTCAAATGCTACAGGTGCATGGCTTTGGAAATTGGCAAAGACTCGTGTTCTTGCTCATGACTCTGGTTATTATCATCAGCTAGTTAGTCATTGGGGAATGGCTAAAGAAGATTCAACTGCTCCCCATCGCCTAAAGCTTGCAATTGAAGACTACCCCTTTGCTTGCGATGAATCGGACCGCGAGCTCCAAGCTTGGTGGACAGAAATTCGAACAGTAGGCCACGGCGACAAACAGGATGATCCATTGTGGCCCGATCTTAATACTCCGGAAGATCTTATTAAAATCCTCACAATTATGATATGGGTAACATCTAGCCATCCTGCAGCTGTCAACTTCGGACAGCCTACCATTGCCAGAACTAAGATCCCTACTGAGGATCCGATGGAAGAAGAATGGAAGCAATTCCTAAAGAACCCTGAGCAAGCGCTCTTGGCGTGCTTACCTTCAGTTGTCCAAGCGACAATAGTTATGGCCATTTTGGACATGTTATCGACTCATTATAAAGATGAAGAGTACATATATTGGTCAGCGCATTGA

Network for GWHGAAZE008278

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	164	215	3.10E-14
PF00305.20	Lipoxygenase	212	275	2.90E-18
PF00305.20	Lipoxygenase	302	418	6.70E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.034
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.133
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.041
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.015
	SRR6706288	Light intensity 20%	0.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.286
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.367
	CNS0095598	Silvery flower (diploied) 1	0.056
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.008
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.142
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.249
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.143
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.052
	CNS0095612	Silvery flower (diploied) 3	0.021
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.052
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.033
	CRR073300	Leaf 1	0.092
	CRR073301	Leaf 2	0.003
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.013
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.021
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.033
	CRR073313	Silver flowering 2	0.007
	CRR073314	Silver flowering 3	0.051
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.018
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.255
	CRR073320	Tawny withering 3	0.000