Gene detail

Detail information of GWHGAAZE008341

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN69523.1	0	hypothetical protein VITISV_040873 [Vitis vinifera]
Swissprot	tr\|P42158\|KC1D_ARATH	2E-54	Casein kinase I isoform delta-like
trEMBL	tr\|A5AZA1\|A5AZA1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN69523.1}
TAIR10	AT3G13670.1	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	70476752	70484788	+
GWHAAZE00000002	mRNA	70476752	70484788	+
GWHAAZE00000002	exon	70476752	70476842	+
GWHAAZE00000002	exon	70476999	70477093	+
GWHAAZE00000002	exon	70478529	70478711	+
GWHAAZE00000002	exon	70478835	70478908	+
GWHAAZE00000002	exon	70479014	70479083	+
GWHAAZE00000002	exon	70479168	70479223	+
GWHAAZE00000002	exon	70479903	70479974	+
GWHAAZE00000002	exon	70480091	70480185	+
GWHAAZE00000002	exon	70480296	70480362	+
GWHAAZE00000002	exon	70480472	70480601	+
GWHAAZE00000002	exon	70480859	70481077	+
GWHAAZE00000002	exon	70481175	70481317	+
GWHAAZE00000002	exon	70481549	70481588	+
GWHAAZE00000002	exon	70482010	70482100	+
GWHAAZE00000002	exon	70482708	70482865	+
GWHAAZE00000002	exon	70483662	70483850	+
GWHAAZE00000002	exon	70484729	70484788	+
GWHAAZE00000002	CDS	70476752	70476842	+
GWHAAZE00000002	CDS	70476999	70477093	+
GWHAAZE00000002	CDS	70478529	70478711	+
GWHAAZE00000002	CDS	70478835	70478908	+
GWHAAZE00000002	CDS	70479014	70479083	+
GWHAAZE00000002	CDS	70479168	70479223	+
GWHAAZE00000002	CDS	70479903	70479974	+
GWHAAZE00000002	CDS	70480091	70480185	+
GWHAAZE00000002	CDS	70480296	70480362	+
GWHAAZE00000002	CDS	70480472	70480601	+
GWHAAZE00000002	CDS	70480859	70481077	+
GWHAAZE00000002	CDS	70481175	70481317	+
GWHAAZE00000002	CDS	70481549	70481588	+
GWHAAZE00000002	CDS	70482010	70482100	+
GWHAAZE00000002	CDS	70482708	70482865	+
GWHAAZE00000002	CDS	70483662	70483850	+
GWHAAZE00000002	CDS	70484729	70484788	+

Transcript Sequence
>GWHTAAZE008349 ATGCCGGAGCTTCGGAGTGGAGTACGCAAAGGCCGTGCTCCGGTTGTAGAAAAAGCTGAGCGTCGGAACCCTAGATCGGAGCATCTGGTCGGTGATAAGAAGATGGGAGATGCTAGTGGTGGATTAAGTGCTAATAGGGTTACTGGGCAGGAGGAAGAAGGAAGTACTGCTCCTTTCCCTGAGAGGGTGCATTCTTTTCTAATAGTTCTTTTCATTGCTTTTGACTTGGCTGATTTTCAGGTACAAGTAGGCGGATCACCAACTTATAAGGTTGAGAGGAAATTGGGTAAAGGTGGATTTGGTCAGGTATTTGTTGGCCGTCGTTTGTCAGGTGGAAATGAACGAGCAACAGGTCCTGGGGCTTTGGAGGTAGCTCTGAAATTTGAGCACAGAAACAGCAAAGGCTGTAACTATGGTCCTCCATATGAGTGGCAAGTCTACAACACTCTTGGTGGTAGTCATGGAGTGCCTAAAGTACACTATAAAGGAAAGCAAGGGGACTACTATGTAATGGTCATGGATATACTGGGCCCCAGCTTATGGGATGTATGGAATACCTCGGGACAGTCGATGTCATCCGAAATGGTAGCTTGTATCGCAGTTGAGTCTCTGTCAATCTTAGAAAAGATGCACTCAAAGGGTTATGTGCACGGAGATGTGAAGCCAGAGAACTTTTTGCTTGGCCAGCCTGATACCCCACAACAAAAGAAGTTGTTTCTTGTTGACCTGGGATTAGCGACAAAGTGGAGGGAGAGTAATAATGGGCCACATGTGGAATACGATCAACGTCCCGACATGTTTAGAGGGACTGTGCGATATGCTAGCGTACATGCTCACTTGGGAAGAACAGCTAGTCGAAGAGACGATCTAGAATCTCTTGCCTATACACTCATTTTTCTTCACAGAGGCAGGCTACCATGGCAAGGCTATCAGGGTGATAATAAATCATTCCTAGTTTGCAAGAAAAAGATGGCTACATCTCCTGAAATGTTGTGCTGCTTCTGCCCTGCACCTTTAAGACAATTTCTCGAGATAGTGGTGAACATGAAATTTGATGAGGAACCTAACTATTCGAAGCTAATATCTCTGTTCGAGGGATTACTTGGCCCAAATCCTGCTATTAGGCCAATAAACACAGATGGTGCTCAGAAGATTATCTTCCAAGTAGGCCAAAAACGTGGTAGATTGAATCTTGAGGAGGAAGATGATGGGCAACCAAAGAAGAAGGTTCGTATGGGAGTTCCTGCAACACAGTGGATTTCAATTTACAATGCCAGATTACCTATGAAACAGAGGTACCATTACAATGTGGCGGATGCAAGGTTGGCACAACATGAATGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTTCTATAGCTGGTTCTAACAACGGAAGCTCTCTTGTGGTGATGTCTAAAGGGACCCAATACTCTCAGCAGTCGTACAAAGTAAGTGATTCGTTTCCGTTCAAATGGATAAACAAGAAGTGGAGGGAAGGGTTTCATGTAACCTCTATGGCAACTGCTGGTACCCGTTGGGGTGTTGTCATGTCTCGTAATGCTGGCTTTAGTGATCAGGTTGTGGAACTTGATTTTCTTTACCCAAGTGAGGGAATCCACAGACGTTGGGATACAGGTTATCGCGTCACATCAACAGCTGCTACATGGGATCAAACTGCTCTCATATTGAGTGTGCCTAAGCGCAAACCTGGTGATGAAACTCAGGAAACTTTGCGTACTTCTCAGTTTCCAAGCGCCCATGTTAAGGAAAAATGGGCGAAGAATTTATATCTTGCCTGCGTGTGCTATGGACGTACAGTATCTTGA

Network for GWHGAAZE008341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0046	Protein Kinases CK1_CK1-Pl family Protein Kinases CK1_CK1-Pl map04626 Plant-pathogen interaction

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	89	376	1.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.093
	SRR3591706	second leaf	23.177
	SRR3591707	mature leaf	29.132
	SRR3591708	Shoot apex	28.237
	SRR3591709	Stem	33.495
	SRR3591710	White floral bud	30.670
	SRR3591711	White flower	47.991
	SRR3591712	Green floral bud	28.271
	SRR3591713	Yellow flower	51.858
SRP173429	SRR8316895	Juvenile bud stage	23.943
	SRR8316896	Juvenile bud stage	34.354
	SRR8316897	Juvenile bud stage	27.838
	SRR8316894	Third green stage	14.644
	SRR8316900	Third green stage	35.769
	SRR8316901	Third green stage	35.915
	SRR8316898	Complete white stage	17.791
	SRR8316899	Complete white stage	50.337
	SRR8316903	Complete white stage	33.309
	SRR8316902	Silver flowering stage	25.350
	SRR8316904	Silver flowering stage	33.319
	SRR8316905	Silver flowering stage	17.738
	SRR8316906	Gold flowering stage	64.564
	SRR8316907	Gold flowering stage	59.651
	SRR8316908	Gold flowering stage	99.147
SRP132670	SRR6706286	Control	31.888
	SRR6706287	Light intensity 50%	29.953
	SRR6706288	Light intensity 20%	31.616
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.240
	CNS0095593	Slightly white alabastrum(diploid) 2	21.193
	CNS0095594	Slightly white alabastrum(diploid) 3	21.287
	CNS0095595	Whole white alabastrum(diploid) 2	19.300
	CNS0095596	Whole white alabastrum(diploid) 3	17.027
	CNS0095597	Whole white alabastrum(diploid) 4	18.691
	CNS0095598	Silvery flower (diploied) 1	33.394
	CNS0095599	Silvery flower (diploied) 2	26.257
	CNS0095600	Silvery flower (diploied) 3	41.457
	CNS0095601	Golden flower (diploid) 1	31.381
	CNS0095602	Golden flower (diploid) 2	48.150
	CNS0095603	Golden flower (diploid) 3	46.280
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.612
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.412
	CNS0095606	Slightly white alabastrum(tetraploid) 3	81.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.005
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.211
	CNS0095610	Silvery flower (diploied) 1	84.287
	CNS0095611	Silvery flower (diploied) 2	69.440
	CNS0095612	Silvery flower (diploied) 3	81.596
	CNS0095613	Golden flower (tetraploid) 1	57.862
	CNS0095614	Golden flower (tetraploid) 2	76.695
	CNS0095615	Golden flower (tetraploid) 3	80.726
CRA001975	CRR073297	Stem 1	33.606
	CRR073298	Stem 2	33.873
	CRR073299	Stem 3	29.940
	CRR073300	Leaf 1	34.349
	CRR073301	Leaf 2	28.918
	CRR073302	Leaf 3	28.610
	CRR073303	Juvenile bud 1	27.050
	CRR073304	Juvenile bud 2	24.876
	CRR073305	Juvenile bud 3	35.084
	CRR073306	Third green 1	31.733
	CRR073307	Third green 2	25.254
	CRR073308	Third green 3	33.642
	CRR073309	Second white 1	27.263
	CRR073310	Second white 2	32.085
	CRR073311	Second white 3	30.330
	CRR073312	Silver flowering 1	36.223
	CRR073313	Silver flowering 2	32.180
	CRR073314	Silver flowering 3	27.626
	CRR073315	Gold flowering 1	24.267
	CRR073316	Gold flowering 2	35.348
	CRR073317	Gold flowering 3	23.400
	CRR073318	Tawny withering 1	29.218
	CRR073319	Tawny withering 2	25.982
	CRR073320	Tawny withering 3	26.023