Gene detail

Detail information of GWHGAAZE008350

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP26944.1	7.3964E-166	hypothetical protein JCGZ_21037 [Jatropha curcas]
Swissprot	tr\|P08196\|PSY1_SOLLC	7E-146	Phytoene synthase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A067K549\|A0A067K549_JATCU	3E-166	Uncharacterized protein {ECO:0000313\|EMBL:KDP26944.1}
TAIR10	AT5G17230.2	5E-116	PHYTOENE SYNTHASE

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	70784484	70787590	-
GWHAAZE00000002	mRNA	70784484	70787590	-
GWHAAZE00000002	exon	70787551	70787590	-
GWHAAZE00000002	exon	70786469	70786641	-
GWHAAZE00000002	exon	70785727	70785962	-
GWHAAZE00000002	exon	70785157	70785349	-
GWHAAZE00000002	exon	70784484	70784645	-
GWHAAZE00000002	CDS	70787551	70787590	-
GWHAAZE00000002	CDS	70786469	70786641	-
GWHAAZE00000002	CDS	70785727	70785962	-
GWHAAZE00000002	CDS	70785157	70785349	-
GWHAAZE00000002	CDS	70784484	70784645	-

Transcript Sequence
>GWHTAAZE008358 ATGACACAGGAGAAACAGAAGGCTATTTGGGCTATATATGTATGGTGCAGGAGGACAGATGAACTAGTTGATGGGCCCAATGCTGCACATATGAGTTCAGCAGTACTTGATAGGTGGGAAAAGAGACTTGAAGACATTTTCAATGGGCGCCCCTTTGACTTGCTTGATGCTGCTCTCACTGATACCATAAACAATTTCCCTCTAGATATTAAGCCATTTAGGGACATGATAGAGGGAATGAGGATGGACACAAGGAAAAGTAGATATGAAGATTTTGAAGAACTATACCTATATTGCTACTATGTGGCTGGGACAGTTGGGCTAATGAGTGTACCAGTCATGGGAATTTCACCTGAATCCCCAATTTCTGCACAAAGTGTCTACAACTCTGCTCTCCATTTGGGCATTGGCAATCAACTCACAAACATTCTCAGAGATGTTGGGGAAGATGCATTGAGAGGGAGAGTATATCTACCACAAGATGAGCTAGCACAATTTGGGTTGAGTGATGAGGATGTTTTCTCAAGAAAGGTGACCAATAAGTGGAGAGATTTCATGAGGGAGCAAATCAGAAGAGCTAGGTTCTATTTCAACCTGGCTGAAGAAGGTGTCTCTCAGCTTGACAAGGATAGTCGTTGGCCGGTGTGGTCTTCATTAATGTTGTACAAAGAGATATTGGATGCAATAGAGGACAATGATTATGACAATTTGACAAAGAGAGCTTATGTTGGAAGGACCAAAAAGCTTCTCATGTTGCCTCTTTCTTACACTAGATCTCTCCCTCCTCTCCCCTCTTTCACTTAA

Network for GWHGAAZE008350

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00494.20	SQS_PSY	3	245	3.70E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02291	crtB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0006696	biological_process	ergosterol biosynthetic process
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0004310	molecular_function	farnesyl-diphosphate farnesyltransferase activity
GO:0051996	molecular_function	squalene synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.055
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.061
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.064
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.043
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.066
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.136
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.023
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.249
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.290
	CNS0095615	Golden flower (tetraploid) 3	0.078
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.195
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.950
	CRR073316	Gold flowering 2	0.609
	CRR073317	Gold flowering 3	0.177
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000