Detail information of GWHGAAZE008355


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010651347.10PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Vitis vinifera]
Swissprottr|Q9C895|BRE1B_ARATH0E3 ubiquitin-protein ligase BRE1-like 2
trEMBLtr|D7SLF9|D7SLF9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI16487.3}
TAIR10AT1G55250.30histone mono-ubiquitination 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7132683571345994+
GWHAAZE00000002mRNA7132683571345994+
GWHAAZE00000002exon7132683571326936+
GWHAAZE00000002exon7133061771330778+
GWHAAZE00000002exon7133086471330951+
GWHAAZE00000002exon7133103071331260+
GWHAAZE00000002exon7133138771331554+
GWHAAZE00000002exon7133198571332181+
GWHAAZE00000002exon7133226871332351+
GWHAAZE00000002exon7133248471332603+
GWHAAZE00000002exon7133271271332898+
GWHAAZE00000002exon7133331071333470+
GWHAAZE00000002exon7133472771334798+
GWHAAZE00000002exon7133489371334969+
GWHAAZE00000002exon7133786671338060+
GWHAAZE00000002exon7134127871341350+
GWHAAZE00000002exon7134144371341529+
GWHAAZE00000002exon7134190871342045+
GWHAAZE00000002exon7134212671342371+
GWHAAZE00000002exon7134406471344171+
GWHAAZE00000002exon7134451971344634+
GWHAAZE00000002exon7134591971345994+
GWHAAZE00000002CDS7132683571326936+
GWHAAZE00000002CDS7133061771330778+
GWHAAZE00000002CDS7133086471330951+
GWHAAZE00000002CDS7133103071331260+
GWHAAZE00000002CDS7133138771331554+
GWHAAZE00000002CDS7133198571332181+
GWHAAZE00000002CDS7133226871332351+
GWHAAZE00000002CDS7133248471332603+
GWHAAZE00000002CDS7133271271332898+
GWHAAZE00000002CDS7133331071333470+
GWHAAZE00000002CDS7133472771334798+
GWHAAZE00000002CDS7133489371334969+
GWHAAZE00000002CDS7133786671338060+
GWHAAZE00000002CDS7134127871341350+
GWHAAZE00000002CDS7134144371341529+
GWHAAZE00000002CDS7134190871342045+
GWHAAZE00000002CDS7134212671342371+
GWHAAZE00000002CDS7134406471344171+
GWHAAZE00000002CDS7134451971344634+
GWHAAZE00000002CDS7134591971345994+
Transcript Sequence

Network for GWHGAAZE008355

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_38218643.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.501
SRR3591706second leaf12.095
SRR3591707mature leaf13.982
SRR3591708Shoot apex19.297
SRR3591709Stem19.909
SRR3591710White floral bud18.974
SRR3591711White flower21.253
SRR3591712Green floral bud19.974
SRR3591713Yellow flower17.914
SRP173429 SRR8316895Juvenile bud stage 10.799
SRR8316896Juvenile bud stage 15.415
SRR8316897Juvenile bud stage 7.917
SRR8316894Third green stage 6.785
SRR8316900Third green stage 12.903
SRR8316901Third green stage 13.072
SRR8316898Complete white stage 5.064
SRR8316899Complete white stage 20.090
SRR8316903Complete white stage 10.892
SRR8316902Silver flowering stage6.435
SRR8316904Silver flowering stage11.465
SRR8316905Silver flowering stage4.630
SRR8316906Gold flowering stage 16.085
SRR8316907Gold flowering stage 16.559
SRR8316908Gold flowering stage 16.403
SRP132670SRR6706286Control13.698
SRR6706287Light intensity 50%13.808
SRR6706288Light intensity 20%14.161
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.840
CNS0095593Slightly white alabastrum(diploid) 29.570
CNS0095594Slightly white alabastrum(diploid) 311.244
CNS0095595Whole white alabastrum(diploid) 29.815
CNS0095596Whole white alabastrum(diploid) 38.845
CNS0095597Whole white alabastrum(diploid) 48.729
CNS0095598Silvery flower (diploied) 114.735
CNS0095599Silvery flower (diploied) 211.378
CNS0095600Silvery flower (diploied) 314.732
CNS0095601Golden flower (diploid) 111.875
CNS0095602Golden flower (diploid) 213.273
CNS0095603Golden flower (diploid) 312.752
CNS0095604Slightly white alabastrum(tetraploid) 113.304
CNS0095605Slightly white alabastrum(tetraploid) 210.866
CNS0095606Slightly white alabastrum(tetraploid) 318.367
CNS0095607Whole white alabastrum(tetraploid) 110.980
CNS0095608Whole white alabastrum(tetraploid) 27.621
CNS0095609Whole white alabastrum(tetraploid) 313.565
CNS0095610Silvery flower (diploied) 115.519
CNS0095611Silvery flower (diploied) 213.580
CNS0095612Silvery flower (diploied) 312.375
CNS0095613Golden flower (tetraploid) 19.080
CNS0095614Golden flower (tetraploid) 212.736
CNS0095615Golden flower (tetraploid) 312.993
CRA001975CRR073297Stem 119.531
CRR073298Stem 217.597
CRR073299Stem 310.441
CRR073300Leaf 114.974
CRR073301Leaf 214.342
CRR073302Leaf 39.620
CRR073303Juvenile bud 19.439
CRR073304Juvenile bud 26.608
CRR073305Juvenile bud 39.681
CRR073306Third green 14.417
CRR073307Third green 23.340
CRR073308Third green 34.346
CRR073309Second white 12.798
CRR073310Second white 26.131
CRR073311Second white 34.884
CRR073312Silver flowering 14.180
CRR073313Silver flowering 24.462
CRR073314Silver flowering 34.010
CRR073315Gold flowering 16.541
CRR073316Gold flowering 211.846
CRR073317Gold flowering 34.206
CRR073318Tawny withering 112.754
CRR073319Tawny withering 212.320
CRR073320Tawny withering 312.777