Gene detail

Detail information of GWHGAAZE008483

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008451007.1	1.6735E-143	PREDICTED: probable receptor-like protein kinase At5g56460 isoform X4 [Cucumis melo]
Swissprot	tr\|Q9FM85\|Y5564_ARATH	8E-109	Probable receptor-like protein kinase At5g56460
trEMBL	tr\|M4F3H2\|M4F3H2_BRARP	6E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra035622.1-P}
TAIR10	AT5G56460.1	6E-90	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	77579661	77584627	+
GWHAAZE00000002	mRNA	77579661	77584627	+
GWHAAZE00000002	exon	77579661	77579994	+
GWHAAZE00000002	exon	77581486	77581761	+
GWHAAZE00000002	exon	77583195	77583331	+
GWHAAZE00000002	exon	77583529	77583637	+
GWHAAZE00000002	exon	77584242	77584627	+
GWHAAZE00000002	five_prime_UTR	77579661	77579930	+
GWHAAZE00000002	CDS	77579931	77579994	+
GWHAAZE00000002	CDS	77581486	77581761	+
GWHAAZE00000002	CDS	77583195	77583331	+
GWHAAZE00000002	CDS	77583529	77583637	+
GWHAAZE00000002	CDS	77584242	77584627	+

Transcript Sequence
>GWHTAAZE008491 TTTTGTCATCATTGTTATCAAGAAAAAAAAATAAGAAAAAAATTGCGCCCACACACAATAGCAATAACATTGTTTCTTCATAATCTTTTTCCATTACTCTCTCAAAAACCCACTTCACATTGAGAGAATTTTGTCCCTTTTTTTTTCCACTAAAAATCATGTTTTCTTGTTCTTTGTTGTGTTTTTTGGGCTAATTGATGAGTGAATCATATTGGGTTTTTGCTTTTTGTTGTTGAGTGAGAGTGGAATTTAGGGCTGTTTTTAGTTTCAATGGGTAGCTGCTGGTGTAGGTGGAAACCTTCAATATACAGAGTCTCTTCCAACACAAAGTCAGAGTTCTCTAAAGATGAGAGTCCACCAATTAAAGAAAAAGTGGAGGAGAGAAAGCTACCCTCGAATCCCGAAGAAGTCGAACACTTACGCCGCAACTCGGGTGCAAATCCGTTGATGGTTTTCACATACAATGAACTAAGGACGATAACTGGAAACTTTAGACAGGACCACATGTTGGGAGGAGGAGGATTTGGGAGCGTTTACAAAGGCTTCATTTCCGATGATCTGAAAAAGGAGGGGATTGAACCTATTCCAGTTGCTGTTAAGGTTCACGACGGGGTTTTGCTTCCACTCCCATGGTCTATCAGAATGAAGATTGCCCTTGGTGCTGCAAAAGGACTTGCTTTCCTCCATGAAGCTGAGAAACCTGTCATCTATCGCGATTTTAAGACATCAAACATTTTACTCGACCAGCTTTCTGACTTTGGACTTGCAAAAGATGGACCAGTGGGGGATAAATCTCATGTTTCCACTCGCATAATGGGAACTTATGGCTACGCTGCACCTGAATACATCATGACAGGACACTTGACTCCTAGAAGCGATGTTTACAGCTATGGAGTAGTTCTTTTGGAACTTCTGACGGGACGAAAATCGCTAGACAAGTTGCGACCAGCAAGGGAACAGAATCTCACAGATTGGGCAGTCCCATTGCTTCGAGATAAGAAGAAACTGGTTAACGTTGTGGATCCAAGATTACAAGGAGATTATCCGGTTAAAGGACTTCACAAGGCAGCTATGCTAGCTTACCACTGCTTAAACCGCAACCCCAAAGCAAGGCCTCTTATGCGGGACATAGTCGATTCCTTGGAGCCCCTCCAACTTCCTTGCGACAACCTTTCAACCGAAAAGTCTACTTTAACTGTCATCATCGAGAATAATACCAAAAACGATCCCAAGTATATCTAG

Network for GWHGAAZE008483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	126	289	4.80E-24

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.449
	SRR3591706	second leaf	14.406
	SRR3591707	mature leaf	14.492
	SRR3591708	Shoot apex	10.526
	SRR3591709	Stem	63.178
	SRR3591710	White floral bud	19.235
	SRR3591711	White flower	6.160
	SRR3591712	Green floral bud	26.126
	SRR3591713	Yellow flower	0.777
SRP173429	SRR8316895	Juvenile bud stage	8.337
	SRR8316896	Juvenile bud stage	10.439
	SRR8316897	Juvenile bud stage	3.233
	SRR8316894	Third green stage	4.975
	SRR8316900	Third green stage	17.146
	SRR8316901	Third green stage	13.750
	SRR8316898	Complete white stage	6.436
	SRR8316899	Complete white stage	38.464
	SRR8316903	Complete white stage	10.074
	SRR8316902	Silver flowering stage	0.429
	SRR8316904	Silver flowering stage	1.419
	SRR8316905	Silver flowering stage	0.468
	SRR8316906	Gold flowering stage	0.301
	SRR8316907	Gold flowering stage	0.574
	SRR8316908	Gold flowering stage	0.606
SRP132670	SRR6706286	Control	15.184
	SRR6706287	Light intensity 50%	17.623
	SRR6706288	Light intensity 20%	20.487
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.222
	CNS0095593	Slightly white alabastrum(diploid) 2	10.429
	CNS0095594	Slightly white alabastrum(diploid) 3	6.052
	CNS0095595	Whole white alabastrum(diploid) 2	8.110
	CNS0095596	Whole white alabastrum(diploid) 3	9.266
	CNS0095597	Whole white alabastrum(diploid) 4	9.196
	CNS0095598	Silvery flower (diploied) 1	5.379
	CNS0095599	Silvery flower (diploied) 2	5.453
	CNS0095600	Silvery flower (diploied) 3	2.571
	CNS0095601	Golden flower (diploid) 1	3.870
	CNS0095602	Golden flower (diploid) 2	2.573
	CNS0095603	Golden flower (diploid) 3	2.091
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.814
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.456
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.180
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.611
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.721
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.460
	CNS0095610	Silvery flower (diploied) 1	2.981
	CNS0095611	Silvery flower (diploied) 2	3.580
	CNS0095612	Silvery flower (diploied) 3	2.472
	CNS0095613	Golden flower (tetraploid) 1	0.354
	CNS0095614	Golden flower (tetraploid) 2	0.957
	CNS0095615	Golden flower (tetraploid) 3	0.227
CRA001975	CRR073297	Stem 1	17.252
	CRR073298	Stem 2	14.876
	CRR073299	Stem 3	15.560
	CRR073300	Leaf 1	24.250
	CRR073301	Leaf 2	24.962
	CRR073302	Leaf 3	24.059
	CRR073303	Juvenile bud 1	30.639
	CRR073304	Juvenile bud 2	27.421
	CRR073305	Juvenile bud 3	35.164
	CRR073306	Third green 1	1.357
	CRR073307	Third green 2	0.561
	CRR073308	Third green 3	3.583
	CRR073309	Second white 1	0.168
	CRR073310	Second white 2	0.630
	CRR073311	Second white 3	0.037
	CRR073312	Silver flowering 1	0.330
	CRR073313	Silver flowering 2	0.077
	CRR073314	Silver flowering 3	0.113
	CRR073315	Gold flowering 1	13.326
	CRR073316	Gold flowering 2	17.292
	CRR073317	Gold flowering 3	12.787
	CRR073318	Tawny withering 1	33.943
	CRR073319	Tawny withering 2	27.849
	CRR073320	Tawny withering 3	59.270