Gene detail

Detail information of GWHGAAZE008513

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009591795.1	PREDICTED: L-ascorbate oxidase homolog [Nicotiana tomentosiformis]
Swissprot	tr\|P29162\|ASOL_TOBAC	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|Q6UN74\|Q6UN74_TOBAC	Ntp302 {ECO:0000313\|EMBL:AAQ90184.1}
TAIR10	AT1G55570.1	SKU5 similar 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	79138434	79140104	+
GWHAAZE00000002	mRNA	79138434	79140104	+
GWHAAZE00000002	exon	79138434	79139293	+
GWHAAZE00000002	exon	79139381	79140104	+
GWHAAZE00000002	CDS	79138434	79139293	+
GWHAAZE00000002	CDS	79139381	79140104	+

Transcript Sequence
>GWHTAAZE008521 ATGAGGACGGCGGCGGCATTTATCGTCTTGTTGTGCCTCTCGGTGGGAGCATTAGTGAAGGGTGAGGATCCTTACCACTTTTTTGACTGGCATATCACCTATGGAACCATCTCTCCACTAGGGGTCCCTGTCGAAGCCATCCTCATCAACGGCCAATTCCCTGGTCCCAGCATCAATTGCACCTCCAATAACAATATCTGGGTTAATGTCTTCAACGAAATTGACGAGCCATTTTTGCTCACGTGGTCTGGGGTGCAACAAAGGAAGAACTCATGGCAGGACGGAACTGCCGGCACCATGTGCCCGATCATGCCAGGGACCAACTACACATATCGGCTTCAGGTTAAGGACCAAATCGGTACCTTTACCTACTTCCCATCCCTTAACTTACAAAAGGCTGCGGGTGGCATTGGCGTGCTCAAGGTCCATAGCCGTGAACTCATCCCCGTTCCATTTGACAACCCAGCTGATGAATATATTATTGTGATGGGGGATTGGTATAACAAAGGGCACAAGGCCATGAAGAAGCTCTTGGACAGTGGACACTCAATTGGCAGGCCTGACGGCATTCAAATAAACGGCAAGTCTACCAAGGTGAATGATAAGCCAGGAGAGCCGCTGTTCACAATGGAGGCTGGCAAAACCTATAGGTATAGGGTATGCAATGTCGGAATGAGGACATCGATAAACTTCAGGTTCCAAGGCCACGCCATGAAGCTTGTTGAGATGGAGGGTTCACACACAGTGCAAAATGACTACGACTCCATGGACTTACACGTTGGTCAATGTGTGTCGGTGTTGGTTAAAGCTGATAAGGATCCCAAGGACTACTACTTTGCTGCATCAAGCAGATTCCTCAACACCGAAGGCATTGCCTGGTCCATCAATCAATTCCGCTCCTTCAGATGGAACCTCACAGCCAGTGCTGCTCGCCCCAACCCTCAGGGATCATACCACTATGGAAAGATTAACATCACCCGCACCATCAAACTTGTCAACAGTAGGCACCAATCTGATGGAAAGCTCCGCTTCGCCATCAATGGTATCTCTCACACGAATAGCGAAACCCCCCTCAAACTCGCCGAATACTTTGGTGTTGCTGACAAGGTGTTTAAGTACGATATCATGGCCGACGAACCCCCATCTGACTCCAGCAAGATCACCGAGGCCCCTAATGTTCTGAATGCCACCTTCCGTAACTTTGTTGAAATCATCTTTGAGAACCATGAGAACACGATTCAAACATGGCACCTCGATGGATACTCTTTCTTCGGAGTGGCTATCGAGCCCGGAACGTGGAGTCCTGAGAAGAGGAAGAATTACAACCTTCTCGATACCGTGAGCAGGCATAACATCCAAGTTTACCCACACTCGTGGGCTGCTATCATGACAACCTTGGACAATGCAGGGATGTGGAACTTGAGATCAGAGATGTGGGAGAGGTACTACTTGGGACAACAGCTATACATCAGTGTTCTATCCCCTGAGCGCTCACTCAGAGACGAGTATAACATTCCTGATAACGCTGTGATATGCGGCCTTGCCAAAGGCTTGCCCAAGCCCCCTAGTTACAACCCAGCCTAA

Network for GWHGAAZE008513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	32	146	6.00E-37
PF00394.23	Cu-oxidase	158	285	2.00E-36
PF07731.15	Cu-oxidase_2	363	495	4.00E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00423	E1.10.3.3	Metabolic pathways	map01100
K00423	E1.10.3.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.738
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.183
	SRR3591708	Shoot apex	0.714
	SRR3591709	Stem	3.051
	SRR3591710	White floral bud	439.876
	SRR3591711	White flower	26.854
	SRR3591712	Green floral bud	669.525
	SRR3591713	Yellow flower	18.230
SRP173429	SRR8316895	Juvenile bud stage	66.209
	SRR8316896	Juvenile bud stage	409.010
	SRR8316897	Juvenile bud stage	196.715
	SRR8316894	Third green stage	157.696
	SRR8316900	Third green stage	639.281
	SRR8316901	Third green stage	672.844
	SRR8316898	Complete white stage	0.490
	SRR8316899	Complete white stage	4.586
	SRR8316903	Complete white stage	1.230
	SRR8316902	Silver flowering stage	9.644
	SRR8316904	Silver flowering stage	18.016
	SRR8316905	Silver flowering stage	6.537
	SRR8316906	Gold flowering stage	2.675
	SRR8316907	Gold flowering stage	1.341
	SRR8316908	Gold flowering stage	0.841
SRP132670	SRR6706286	Control	370.303
	SRR6706287	Light intensity 50%	349.350
	SRR6706288	Light intensity 20%	288.366
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	445.450
	CNS0095593	Slightly white alabastrum(diploid) 2	331.954
	CNS0095594	Slightly white alabastrum(diploid) 3	513.243
	CNS0095595	Whole white alabastrum(diploid) 2	698.801
	CNS0095596	Whole white alabastrum(diploid) 3	960.847
	CNS0095597	Whole white alabastrum(diploid) 4	682.925
	CNS0095598	Silvery flower (diploied) 1	35.198
	CNS0095599	Silvery flower (diploied) 2	127.936
	CNS0095600	Silvery flower (diploied) 3	36.707
	CNS0095601	Golden flower (diploid) 1	43.648
	CNS0095602	Golden flower (diploid) 2	25.548
	CNS0095603	Golden flower (diploid) 3	27.903
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1003.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	996.564
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	1664.660
	CNS0095608	Whole white alabastrum(tetraploid) 2	1906.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	1005.884
	CNS0095610	Silvery flower (diploied) 1	20.332
	CNS0095611	Silvery flower (diploied) 2	90.716
	CNS0095612	Silvery flower (diploied) 3	224.355
	CNS0095613	Golden flower (tetraploid) 1	33.605
	CNS0095614	Golden flower (tetraploid) 2	7.611
	CNS0095615	Golden flower (tetraploid) 3	123.194
CRA001975	CRR073297	Stem 1	155.070
	CRR073298	Stem 2	214.120
	CRR073299	Stem 3	140.473
	CRR073300	Leaf 1	500.099
	CRR073301	Leaf 2	480.229
	CRR073302	Leaf 3	285.860
	CRR073303	Juvenile bud 1	456.051
	CRR073304	Juvenile bud 2	425.924
	CRR073305	Juvenile bud 3	57.143
	CRR073306	Third green 1	327.843
	CRR073307	Third green 2	418.179
	CRR073308	Third green 3	320.716
	CRR073309	Second white 1	27.043
	CRR073310	Second white 2	45.602
	CRR073311	Second white 3	54.415
	CRR073312	Silver flowering 1	303.867
	CRR073313	Silver flowering 2	365.184
	CRR073314	Silver flowering 3	193.399
	CRR073315	Gold flowering 1	281.267
	CRR073316	Gold flowering 2	58.636
	CRR073317	Gold flowering 3	190.503
	CRR073318	Tawny withering 1	256.678
	CRR073319	Tawny withering 2	221.611
	CRR073320	Tawny withering 3	208.165