Gene detail

Detail information of GWHGAAZE008520

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010247849.1	PREDICTED: L-ascorbate oxidase homolog isoform X3 [Nelumbo nucifera]
Swissprot	tr\|P29162\|ASOL_TOBAC	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|Q6UN74\|Q6UN74_TOBAC	Ntp302 {ECO:0000313\|EMBL:AAQ90184.1}
TAIR10	AT1G55570.1	SKU5 similar 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	79590067	79591683	+
GWHAAZE00000002	mRNA	79590067	79591683	+
GWHAAZE00000002	exon	79590067	79590868	+
GWHAAZE00000002	exon	79590956	79591683	+
GWHAAZE00000002	CDS	79590067	79590868	+
GWHAAZE00000002	CDS	79590956	79591683	+

Transcript Sequence
>GWHTAAZE008528 ATGAAAGCTGAGGATCCTTACCATTTTTTCAACTGGAAGATTACCTACGGTACCCTCTCTCCATTAGGTGTTCCAACCGAAGTGATCCTCATTAATGGGGAGTTTCCTGGCCCCAACATCAATTGCACATCCAACAACAACATTTGGGTTAATGTCTTTAATGAAATTGATGAGCCATTTTTGCTTACATGGTCTGGCGTGCAGCTAAGGAAGAATTCATGGCAAGATGGCACAGCCGGCACCATGTGCCCTATTCAACCTGGGACCAACTACACCTACCGCCTTCAGGTTAAGGACCAGATTGGTACATTCACCTACTTCCCTACCCTTAACCTACAAAAGGCTGCTGGTGGTGTTGGTGTGATCAAGGTCCATAGCCGTGAACTCATCCCAGTTCCGTTTGACAATCCGGCTGACGAGTATGTTATTGTGACGGGAGACTGGTACAACAAGGGCCACAAAGCCTTGAAGAAGATCTTGGACAGTGGACAATCCATTGCCAGGCCTGACGGCATCCATATCAACGGCAAATCTGCTAAGGTCAATGACAAGGCTAATGACGCACTCTTCACAATGGAAGCTGGAAAGACTTACAGATATAGAGTATGCAATTATGGAATGAGGACATCGATTAACTTCAGGTTCCAAGGCCACGCCATGAAACTTGTCGAGATGGAGGGATCACACACCATTCAAAATGACTACGACTCGATGGACCTGCATGTTGGGCAATGTGTGTCGGTGCTGGTGAAAGCAAACCAAGATCCCAATGACTACTACTTCGTGGTCTCTAGCAGATTCCAAGACACTGAAGGCATTGCTTGGTCTATCAATCAATTCCGGTCCTTCAGGTGGAACCTCACGGCTAGCGCTGCTCGGCCCAACCCTCAGGGATCATACCACTATGGAAAGATTAATATCACCCGCACCATCAAGCTTGTCAACACCAAACATGAATCTAATGGAAAGCTTCGCTTCACAATCAATGGTGTCTCCCACACAAATGCTGATACCCCGGTTAAGCTCGCTGAGTACTTTGGAGTTGCTGACAAGGTGTTTAAATACGATCTCATGCCTGACGAGCCCCCATCCGATACAAACAAGTTCATCGAGGCCCCAAATGTCCTCAATGCCACCTTCCGTAACTTTGTGGAGATCATCTTCGAGAACCATGAGAAGACTATCCAGACATGGCACCTTAGCGGACACTCCTTCTTCGCAGTGGCCATTGAACCAGGGACGTGGAGCCCAGAGAAGAGGAAGAACTACAACCTTCTTGATACTGTAAGCAGGTACAACATCCAAGTTTATCCTAACTCGTGGGCTGCTATAATGACAACCTTGGACAATGCTGGAATGTGGAACTTGAGGTCAGATATGTGGGAGAGATACTACTTGGGACAGCAACTCTACATCAGCCTCCTCTCCCCAGAGCGCTCACTTAGGGACGAGTATGACATTCCTGACAATGCAATAATTTGTGGCATTGTCAAGGGATTGCCCAAGCCCCCTGTTTACAATCCTGTCTAA

Network for GWHGAAZE008520

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	14	128	1.90E-37
PF00394.23	Cu-oxidase	140	268	9.80E-37
PF07731.15	Cu-oxidase_2	351	477	1.70E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00423	E1.10.3.3	Metabolic pathways	map01100
K00423	E1.10.3.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.046
	SRR3591707	mature leaf	0.066
	SRR3591708	Shoot apex	0.191
	SRR3591709	Stem	0.441
	SRR3591710	White floral bud	47.002
	SRR3591711	White flower	2.509
	SRR3591712	Green floral bud	174.277
	SRR3591713	Yellow flower	0.840
SRP173429	SRR8316895	Juvenile bud stage	15.068
	SRR8316896	Juvenile bud stage	66.142
	SRR8316897	Juvenile bud stage	47.547
	SRR8316894	Third green stage	34.325
	SRR8316900	Third green stage	173.741
	SRR8316901	Third green stage	173.247
	SRR8316898	Complete white stage	0.386
	SRR8316899	Complete white stage	1.821
	SRR8316903	Complete white stage	0.783
	SRR8316902	Silver flowering stage	1.259
	SRR8316904	Silver flowering stage	3.271
	SRR8316905	Silver flowering stage	0.880
	SRR8316906	Gold flowering stage	1.048
	SRR8316907	Gold flowering stage	0.534
	SRR8316908	Gold flowering stage	0.511
SRP132670	SRR6706286	Control	83.924
	SRR6706287	Light intensity 50%	86.355
	SRR6706288	Light intensity 20%	74.454
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	102.819
	CNS0095593	Slightly white alabastrum(diploid) 2	74.030
	CNS0095594	Slightly white alabastrum(diploid) 3	116.727
	CNS0095595	Whole white alabastrum(diploid) 2	205.009
	CNS0095596	Whole white alabastrum(diploid) 3	250.058
	CNS0095597	Whole white alabastrum(diploid) 4	203.145
	CNS0095598	Silvery flower (diploied) 1	2.560
	CNS0095599	Silvery flower (diploied) 2	13.830
	CNS0095600	Silvery flower (diploied) 3	2.951
	CNS0095601	Golden flower (diploid) 1	8.191
	CNS0095602	Golden flower (diploid) 2	5.028
	CNS0095603	Golden flower (diploid) 3	3.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	214.088
	CNS0095605	Slightly white alabastrum(tetraploid) 2	203.554
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.232
	CNS0095607	Whole white alabastrum(tetraploid) 1	320.418
	CNS0095608	Whole white alabastrum(tetraploid) 2	358.941
	CNS0095609	Whole white alabastrum(tetraploid) 3	175.640
	CNS0095610	Silvery flower (diploied) 1	1.099
	CNS0095611	Silvery flower (diploied) 2	6.753
	CNS0095612	Silvery flower (diploied) 3	16.968
	CNS0095613	Golden flower (tetraploid) 1	2.286
	CNS0095614	Golden flower (tetraploid) 2	0.264
	CNS0095615	Golden flower (tetraploid) 3	11.518
CRA001975	CRR073297	Stem 1	45.133
	CRR073298	Stem 2	64.347
	CRR073299	Stem 3	33.278
	CRR073300	Leaf 1	215.747
	CRR073301	Leaf 2	194.232
	CRR073302	Leaf 3	126.273
	CRR073303	Juvenile bud 1	185.473
	CRR073304	Juvenile bud 2	226.743
	CRR073305	Juvenile bud 3	16.495
	CRR073306	Third green 1	54.659
	CRR073307	Third green 2	69.827
	CRR073308	Third green 3	50.585
	CRR073309	Second white 1	4.615
	CRR073310	Second white 2	7.780
	CRR073311	Second white 3	10.051
	CRR073312	Silver flowering 1	55.128
	CRR073313	Silver flowering 2	68.941
	CRR073314	Silver flowering 3	31.022
	CRR073315	Gold flowering 1	45.729
	CRR073316	Gold flowering 2	7.726
	CRR073317	Gold flowering 3	32.760
	CRR073318	Tawny withering 1	39.901
	CRR073319	Tawny withering 2	39.464
	CRR073320	Tawny withering 3	35.008