Gene detail

Detail information of GWHGAAZE008784

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606600.1	3.1702E-114	PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SRV1\|BPM4_ARATH	3E-95	BTB/POZ and MATH domain-containing protein 4
trEMBL	tr\|A0A022S2K0\|A0A022S2K0_ERYGU	2E-114	Uncharacterized protein {ECO:0000313\|EMBL:EYU46143.1}
TAIR10	AT3G03740.1	3E-71	BTB-POZ and MATH domain 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	91672278	91681418	+
GWHAAZE00000002	mRNA	91672278	91681418	+
GWHAAZE00000002	exon	91672278	91672490	+
GWHAAZE00000002	exon	91679990	91680335	+
GWHAAZE00000002	exon	91680804	91681418	+
GWHAAZE00000002	five_prime_UTR	91672278	91672485	+
GWHAAZE00000002	CDS	91672486	91672490	+
GWHAAZE00000002	CDS	91679990	91680335	+
GWHAAZE00000002	CDS	91680804	91681163	+
GWHAAZE00000002	three_prime_UTR	91681164	91681418	+

Transcript Sequence
>GWHTAAZE008794 TATATATTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGACATACGTGTCGGTGTTTATCGCATTGGCGAGCGAGGGGACGGATGTTAGGGCTTTGTTCGAGTTGACATTGGTGGATCAGAGTGGGAAGGGGAAGCACAAGGTTCATAGCCACTTTGATAGGTCGTTGGAGAGCGGCCCGTATACGTTGAAGTATCGAGGCAGCATGTGGGGATATAAGCGTTTTTTCAGAAGAGCTATGCTTGAAACTTCAGATTATCTCAAAGATGATTGCTTGAAAATTAATTGTACTGTTGGAGTTGTGGTTTCTGCAATAGACTGTTCAAGATTACATTCCATTCAGGTGCCAGATTCTGATATTGGAAAGCATTTCGGTATGCTATTGGAGAGTATGGAAGGTTCAGATGTTATTTTTAACATTGGTGGCGAAAAATTTAATGCTCATAAGTTAGTACTGGCTGCCCGATCCAATGTATTTCGATCTGAATTTTTCGATAAAGGGGTTGCTGATGCACAGGAGATTATTGTGAAGGATATGGAACCCAATGTTTTTAAGGCTATGCTGCACTTTATATATAGAGATGCTCTTGATGAAGATGAGTTGGTGGCTTCTACTTCTTCTTGTGCACCCCCCTCTTCTGTATTTGACTCATTAACAGCGAAGTTGTTAGCAGCAGCTGACAAGTATGACTTGGGAAGACTCAGGCGGTTGTGTGAGTCTTTTCTTTGCAAGGATATATCTGTCAACTCTGCTGGGAGGCTCTTAGCTCTCGCTGATCGTTATAATGCTACGGAGTTAAAAGCAGTTTGCCTGAGATTTGCCGCAGAAAACCTTGCAGGTACTTATTGTGTTCCTGTTTTAAGTACCTACAGATGTATATATATTTGCAAAAGAATTTCAACAAAAACTGTCTGAACAAAACCAAAAATTATGATGGAATGTGGAATACGCCACCTGTGAACTCAATTTCAGCTATGACAGACCCAATATAAACGAAGTCATATCTCTTGGTGAAAGAGACTTTTGGGACAGTTGTGCCTTCACAAACCAACTAGTAGAAATGCATTACCTTGAAGCTAAAATGATGCACATCGAGAATCCAAGCTCTGGGGAATTGGAACTTTTTGCAATCCTATTCCTGTGGATGGTCTCATTGACTGACTTTCTTCA

Network for GWHGAAZE008784

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	59	177	5.50E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10523	SPOP	Hedgehog signaling pathway	map04340
K10523	SPOP	Hedgehog signaling pathway - fly	map04341

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.045
	SRR3591706	second leaf	4.463
	SRR3591707	mature leaf	5.672
	SRR3591708	Shoot apex	9.734
	SRR3591709	Stem	7.689
	SRR3591710	White floral bud	10.839
	SRR3591711	White flower	11.196
	SRR3591712	Green floral bud	9.544
	SRR3591713	Yellow flower	10.343
SRP173429	SRR8316895	Juvenile bud stage	5.087
	SRR8316896	Juvenile bud stage	7.302
	SRR8316897	Juvenile bud stage	3.410
	SRR8316894	Third green stage	2.163
	SRR8316900	Third green stage	8.458
	SRR8316901	Third green stage	6.635
	SRR8316898	Complete white stage	3.606
	SRR8316899	Complete white stage	10.140
	SRR8316903	Complete white stage	4.596
	SRR8316902	Silver flowering stage	3.194
	SRR8316904	Silver flowering stage	5.991
	SRR8316905	Silver flowering stage	2.381
	SRR8316906	Gold flowering stage	8.068
	SRR8316907	Gold flowering stage	6.869
	SRR8316908	Gold flowering stage	7.597
SRP132670	SRR6706286	Control	5.141
	SRR6706287	Light intensity 50%	5.672
	SRR6706288	Light intensity 20%	5.342
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.927
	CNS0095593	Slightly white alabastrum(diploid) 2	7.993
	CNS0095594	Slightly white alabastrum(diploid) 3	5.895
	CNS0095595	Whole white alabastrum(diploid) 2	9.624
	CNS0095596	Whole white alabastrum(diploid) 3	9.766
	CNS0095597	Whole white alabastrum(diploid) 4	9.218
	CNS0095598	Silvery flower (diploied) 1	7.761
	CNS0095599	Silvery flower (diploied) 2	8.667
	CNS0095600	Silvery flower (diploied) 3	7.490
	CNS0095601	Golden flower (diploid) 1	11.924
	CNS0095602	Golden flower (diploid) 2	12.406
	CNS0095603	Golden flower (diploid) 3	11.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.091
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.799
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.938
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.651
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.987
	CNS0095610	Silvery flower (diploied) 1	18.108
	CNS0095611	Silvery flower (diploied) 2	24.175
	CNS0095612	Silvery flower (diploied) 3	14.532
	CNS0095613	Golden flower (tetraploid) 1	13.229
	CNS0095614	Golden flower (tetraploid) 2	15.831
	CNS0095615	Golden flower (tetraploid) 3	22.722
CRA001975	CRR073297	Stem 1	6.971
	CRR073298	Stem 2	6.713
	CRR073299	Stem 3	6.714
	CRR073300	Leaf 1	5.452
	CRR073301	Leaf 2	4.558
	CRR073302	Leaf 3	4.886
	CRR073303	Juvenile bud 1	5.882
	CRR073304	Juvenile bud 2	3.848
	CRR073305	Juvenile bud 3	4.156
	CRR073306	Third green 1	2.851
	CRR073307	Third green 2	2.928
	CRR073308	Third green 3	1.907
	CRR073309	Second white 1	4.120
	CRR073310	Second white 2	4.439
	CRR073311	Second white 3	5.022
	CRR073312	Silver flowering 1	7.483
	CRR073313	Silver flowering 2	6.528
	CRR073314	Silver flowering 3	4.117
	CRR073315	Gold flowering 1	3.237
	CRR073316	Gold flowering 2	3.862
	CRR073317	Gold flowering 3	4.165
	CRR073318	Tawny withering 1	3.711
	CRR073319	Tawny withering 2	3.877
	CRR073320	Tawny withering 3	6.522