Gene detail

Detail information of GWHGAAZE008795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251642.1	1.2283E-152	PREDICTED: (+)-neomenthol dehydrogenase-like isoform X3 [Nelumbo nucifera]
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	3E-90	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A022S036\|A0A022S036_ERYGU	6E-151	Uncharacterized protein {ECO:0000313\|EMBL:EYU46137.1}
TAIR10	AT3G61220.1	4E-74	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	92436794	92439921	+
GWHAAZE00000002	mRNA	92436794	92439921	+
GWHAAZE00000002	exon	92436794	92436874	+
GWHAAZE00000002	exon	92437909	92438164	+
GWHAAZE00000002	exon	92438559	92438636	+
GWHAAZE00000002	exon	92438748	92438933	+
GWHAAZE00000002	exon	92439544	92439921	+
GWHAAZE00000002	five_prime_UTR	92436794	92436842	+
GWHAAZE00000002	CDS	92436843	92436874	+
GWHAAZE00000002	CDS	92437909	92438164	+
GWHAAZE00000002	CDS	92438559	92438636	+
GWHAAZE00000002	CDS	92438748	92438933	+
GWHAAZE00000002	CDS	92439544	92439921	+

Transcript Sequence
>GWHTAAZE008805 TAGCAACATACTAAAGGAAGCCCAAATCAACCATCAAATCACAGCTGCAATGGCAATGAATGTGAAGCATTCAAATGAGAGGTATGCGGTGGTTACGGGAGCAAACAAGGGCATAGGCCTGGAGGTCGTCCGGCAGCTTGCGATCGCCGGAGTGAAGGTGGTTTTGACGGCAAGAGATGAGGGGAGGGGCATCGCCGCCGTACAATCTCTCTGCGGTGGAGATGGTTCTGGTTTGTCCAACAACGTACTCTTCCACCAGCTTGACGTACAAGACCCTGATAGCATTGAATTGATGGCCCAATTTATACGCACCAATTTTGGAAGGCTTGATATTTTGGTAAACAATGCTGGTGCTTCAGGGGTTATGGTTGATGAAGATGGGCTAAAAGCCCTCAATATAGATCCTTCCTCTTGGTTGTCAGGGAAGGCCACAGGCATGGTTCAAGGTGTGATAAAAACAACATATGAAAAGGCAAGAGAGTGCTTGGGCACCAATTATTATGGTGTCAAGAATGTCACAAAAGCGCTTCTTCCATTGCTAAATCTTTCTACTTCAGGGGGGAGGATTGTCAATGTTTCCTCCCTCAGAGGCGAATTAAGGCGAATTCCTAGTGAACAAACGAGGAAAGAACTCGAAGATATAGATGCCCTAACAGAAGAGAAGATCGATAAGCTAGTAGAGAAATTTATGCGTGATCTAAAAGCAGACGAGCTTGAAGCCAACGGATGGTCAAAAATGCTACCGGCTTACAGCGTATCGAAGGTGATGCTCAATGCGTACACTAGGGTTCTTGCAAGGGATAACCCTAAGATGCTTATAAATTGTGTGCACCCGGGGTTTGTTAATACGGATATTAATTGGCACACGGGGACCATGACAGTTGCAGAGGGAGCTGAAGGTCCAGTCATGTTGGCTCTTTTGCCCAATGGAGGTCTCACCGGACGCTATTTCGACCGTACAGAAGTGGCTGAGTTTTGA

Network for GWHGAAZE008795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	12	183	3.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.827
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.153
	SRR3591708	Shoot apex	0.877
	SRR3591709	Stem	0.346
	SRR3591710	White floral bud	1.944
	SRR3591711	White flower	2.655
	SRR3591712	Green floral bud	0.932
	SRR3591713	Yellow flower	0.248
SRP173429	SRR8316895	Juvenile bud stage	0.510
	SRR8316896	Juvenile bud stage	1.052
	SRR8316897	Juvenile bud stage	0.475
	SRR8316894	Third green stage	0.432
	SRR8316900	Third green stage	1.977
	SRR8316901	Third green stage	2.548
	SRR8316898	Complete white stage	0.047
	SRR8316899	Complete white stage	0.704
	SRR8316903	Complete white stage	0.088
	SRR8316902	Silver flowering stage	0.212
	SRR8316904	Silver flowering stage	0.091
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.275
	SRR8316907	Gold flowering stage	0.072
	SRR8316908	Gold flowering stage	0.236
SRP132670	SRR6706286	Control	0.568
	SRR6706287	Light intensity 50%	1.030
	SRR6706288	Light intensity 20%	1.517
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.246
	CNS0095593	Slightly white alabastrum(diploid) 2	1.644
	CNS0095594	Slightly white alabastrum(diploid) 3	2.153
	CNS0095595	Whole white alabastrum(diploid) 2	4.699
	CNS0095596	Whole white alabastrum(diploid) 3	4.870
	CNS0095597	Whole white alabastrum(diploid) 4	8.044
	CNS0095598	Silvery flower (diploied) 1	0.642
	CNS0095599	Silvery flower (diploied) 2	0.366
	CNS0095600	Silvery flower (diploied) 3	0.384
	CNS0095601	Golden flower (diploid) 1	1.203
	CNS0095602	Golden flower (diploid) 2	0.274
	CNS0095603	Golden flower (diploid) 3	0.463
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.764
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.871
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.794
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.372
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.519
	CNS0095610	Silvery flower (diploied) 1	0.572
	CNS0095611	Silvery flower (diploied) 2	0.575
	CNS0095612	Silvery flower (diploied) 3	0.296
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.103
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.209
	CRR073298	Stem 2	0.367
	CRR073299	Stem 3	0.139
	CRR073300	Leaf 1	1.515
	CRR073301	Leaf 2	1.303
	CRR073302	Leaf 3	0.189
	CRR073303	Juvenile bud 1	0.267
	CRR073304	Juvenile bud 2	0.981
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.767
	CRR073307	Third green 2	0.602
	CRR073308	Third green 3	0.244
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.204
	CRR073311	Second white 3	0.158
	CRR073312	Silver flowering 1	0.076
	CRR073313	Silver flowering 2	0.030
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.523
	CRR073316	Gold flowering 2	0.619
	CRR073317	Gold flowering 3	0.546
	CRR073318	Tawny withering 1	2.571
	CRR073319	Tawny withering 2	1.424
	CRR073320	Tawny withering 3	3.151