Gene detail

Detail information of GWHGAAZE008945

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002272319.3	PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
Swissprot	tr\|Q9FL28\|FLS2_ARATH	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor)
trEMBL	tr\|V9Q689\|V9Q689_VITVI	Flagelling sensing 2 {ECO:0000313\|EMBL:AHC08662.1}
TAIR10	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	97424695	97429122	+
GWHAAZE00000002	mRNA	97424695	97429122	+
GWHAAZE00000002	exon	97424695	97427833	+
GWHAAZE00000002	exon	97428710	97429122	+
GWHAAZE00000002	CDS	97424695	97427833	+
GWHAAZE00000002	CDS	97428710	97429122	+

Transcript Sequence
>GWHTAAZE008955 ATGGTGTTTCAAAGTACATGCTTTACTGTACTTGTACTCTGTTCTATTCTACTTGTTTCATTTGCACAACTGAACACTGAAGTTGAAACTGAGGCCTTGAAAGCATTCAAGAACTCGATCAGCAACGACCCGTTTGGCGCGCTGGCGGACTGGACTGATTCGCAGCCTCACTGCAACTGGACTGGAATTGTATGCGCTGCTTCATCCAAACGCATCATTTCCATTTCTCTGGTGGAAAAGCAGTTCCAGGGCTCCATATCCCCATTCCTCGGAAACCTTTCCAGCCTCCAGGTTCTTGATCTAACTTCAAATTCTTTCACTGGCCAAATCCCTCCTCAGCTGGGACTTTGCTCACAGCTTTCTGAACTCACTCTTTATTCGAATTCCCTCTCGGGTCCAATTCCTCCCGAGCTAGGAAAACTTCAAAACCTCCAGTCCATAGACTTGGGAACCAATTTCCTCAACGGGAAAATCCCCGAGAGTCTCTGTAACTGCACCGCATTGTTAGCCCTCGGCCTAGATACTAACAATTTTACCGGACCAATCCCATTGAACATCGGTAACTTGGCTAATCTTCAACTTTTTATAGCTCAAGAAAATGACTTGACCGGTTCGATCCCTCCTTCCATTGGTGGGTTGGAAGCTATTCAAATAATCAACCTGAGCCTAAACAGGTTGACCGGACTAATACCTCGAGAGATGGGGAATTTATCAAACCTGGAAAATCTTCAGTTGCTGGATAATTTTCTTACTGGAAAAATCCCACCTGAGCTAAGCCACTGTAAAAAATTTGTTTCTTTAAACATATACCGCAATCAGCTCACTGGAGCCATTCCACCTGAGCTTGGAAACTTGGCTAGCTTACAAATATTGCGTTTATACGGCAATAAGCTCAATTCTACAATTCCACTCTCATTGTTTCGATTGAAATCATTAACAAATTTGGGACTTTCGGGGAACGAGTTAATCGGTAAAATACCTTCCGAGATTGGTTCTTTGAAATCCTTACAAGTACTGACTCTCCACTCGAATTCTTTCACTGGCGGGATCCCTCTGTCCATAACAAACTTGACCAATTTAACGTACTTGTCCCTCGGCTTCAATTTCCTCACAGGGTCAATACCGAAAAATATTGGGTCGCTATATAATTTAAAGAACTTGACCCTGAATAGCAATCTTCTTGAGGGACCTGTTCCTCTTAGTATCACCAATTGTACAAGCCTTCTTGTTATAAGTTTGGCCTACAATAGACTAACAGGGAAAATTCCAGCAGGACTCGGGCAGTTGTCAAATCTTACATTTCTATCCATCGGAAAGAATAAAATGTCCGGCGATATACCTGATGACCTCTTCGATTGCTCGAGTCTCAATAGGCTAGATTTGGCATGGAACAATTTGAGCGGATTGTTGAAACCGAGTATTGGGAAGCTCTCAAATCTTCAGAATCTGCAACTTCATTCAAATTCGTTAGTTGGGTCAATCCCGCAAGAGATAGGCAATATAAGTCGATTGAATACATTATTTCTCGATGGAAATCAATTTTCAGGGCTAGTGCCTCGTGAATTGTCGAAACTTACCCTTCTCCAAGGCCTTTCGCTGAGTCACAATTTGCTGGAAGGAGCGATTCCTGAGGAAATTTTTGAGCTGAAGCAGTTGACCGATCTTCGCCTGCAGAATAACAAGTTTGTCAGTTCCATTCCTAATGCTGTTTCGAAACTGGAGCTGCTTTCGTTCTTGGACCTCAGTGGGAACATGCTCAATGGTACAATCCCGAAAAGTATGACAAAGCTGAACCGAATTACAACTTTGGACCTCTCACACAACCGTCTAACGGGACCTGTTCCAGGGTCGGTGATCACAAGTATGAGAAATATTCAGATATATCTCAACCTTTCTTATAATTATCTAGAAGGAACAATTCCAGATGAGATTGGCAAGCTAGAAATGATACAAGCTATTGATATCTCAAACAATAATCTGTCGGGAAGGATCCCAGCTACACTTGAAGGCTGCAGAAATTTGTTTGATCTTGATTTATCAAGCAATGAGCTTTCGGGTCAAATTCCATCACAAATCTTTACCGGGCTTGATGTGCTTACAAGCTTGAACCTTTCAAAGAACCGACTAGATGGTGCACTTCCCGAAAATTTGGCAAGCCTGAAGAATCTTAGCTCCCTCGATCTTTCTCAGAACAAGTTCACAGGTGTTATCCCTGAAAGTTTTGCCAACATTTCTACTTTGAAATGTCTCAACCTTTCTTTCAATCAACTTGAAGGACGCGTTCCAGAGAGTGGGGTATTCAGAAACATAAATGCAACCAGTGTGGCTGGAAACCCGTCTCTCTGTGGGGCCAGATATCTCATCGCGTGTAGAAGCACGAGCCATAGGTTGAACCGGTTAGCCAAGAAGACCATGTGGATTCTTGTAGGACTCGGTTCTGTTTTCGTATTCCTGCTTCTGCTGGTGGCGGTTCCGTTACTTGGCCGATACTTAAAAAAGCAAAAAATGAAGACAGTTGAGGTTGAGGAACCCGATTACAGCTTAGCCTTGGCCCTCAAGCGGTTCAATCAAAGGGATTTAGAGAACGCTACTAATTTCTTCAGCGAAGATAACATCATTGGCACGAGCAGTTTGAGCACTGTGTACAAGGGTAGACTGGAAGATGGGGAGATGATAGCTGTAAAGAACTTGAATTTGCATCAGTTTTCGACCGAGTCTGACAAGTCATTCAACAGAGAAGTAAAGACCCTGAACAAGTTGAGGCATAGGAATCTAGTGAAGGTACTCGGGTACGCTTGGGAGAGTAAGAAGCTAAAGGCTTTAGTTCTAGAGTACATGGAAAACGGGAACTTGGAGAGCATTATACATGACTCTGCAGTGGATTTATCGATGTGGACATTGTCAAAGAGGATCGACGTTTTGGTCTCTATTGCGAGGGGGTTGGTTTACTTACATTCGGGTTATGATTTGCCCATAGTTCACTGTGATTTGAAGCCTTCGAATATTCTTTTCGATGGAAAGTGGGATGCCCACGTGAGCGATTTTGGGACGGCTCGAATGCTGGGTGTTCACCTGCAAGATGGAACCAAACTCTCATTGTCATCTGGATTTGAAGGCACAATCGGCTACTTGGCACCAGAGTTTGCATATATGAGGAAAGTTACAACGAAAGTGGACGTGTTCAGCTTTGGTGTAGTAGTGATGGAGTTTCTCACGGGACGGAGACCAACAGGACTCGAAGAAGAGAATGGGTTGCCAATTACGTTGCCTCAGCTAGTGCAGAAATCACTTGAAAATGGAATCAGCAGTGTACTTCAAATCATCGACCCTCTTCTAGCTTCTAATGTCTCCAAGAATGAGGGTGTAGTAGAAGATCTCCTTAAATTGGCCTTTTCTTGCACCTGCCCGGTTCCCGAGGATCGACCTGACATGGATCAAGTGTTGTCTTCCCTTTCAAAAGTAAGTAAGATTGTATCACGCCTTGACCATACTCACAGAATGGGATCAGATCAAAACAGCAATTCAAATGCCAATCGGTACTCGGCCCATTAA

Network for GWHGAAZE008945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	65	1.40E-09
PF00560.34	LRR_1	143	165	1.3
PF00560.34	LRR_1	456	477	1.4
PF13855.7	LRR_8	551	610	3.20E-07
PF13855.7	LRR_8	629	684	2.00E-06
PF13855.7	LRR_8	699	757	1.20E-09
PF00069.26	Pkinase	868	1149	3.30E-44

Protein Sequence

>GWHPAAZE008950
MVFQSTCFTVLVLCSILLVSFAQLNTEVETEALKAFKNSISNDPFGALADWTDSQPHCNWTGIVCAASSKRIISISLVEKQFQGSISPFLGNLSSLQVLDLTSNSFTGQIPPQLGLCSQLSELTLYSNSLSGPIPPELGKLQNLQSIDLGTNFLNGKIPESLCNCTALLALGLDTNNFTGPIPLNIGNLANLQLFIAQENDLTGSIPPSIGGLEAIQIINLSLNRLTGLIPREMGNLSNLENLQLLDNFLTGKIPPELSHCKKFVSLNIYRNQLTGAIPPELGNLASLQILRLYGNKLNSTIPLSLFRLKSLTNLGLSGNELIGKIPSEIGSLKSLQVLTLHSNSFTGGIPLSITNLTNLTYLSLGFNFLTGSIPKNIGSLYNLKNLTLNSNLLEGPVPLSITNCTSLLVISLAYNRLTGKIPAGLGQLSNLTFLSIGKNKMSGDIPDDLFDCSSLNRLDLAWNNLSGLLKPSIGKLSNLQNLQLHSNSLVGSIPQEIGNISRLNTLFLDGNQFSGLVPRELSKLTLLQGLSLSHNLLEGAIPEEIFELKQLTDLRLQNNKFVSSIPNAVSKLELLSFLDLSGNMLNGTIPKSMTKLNRITTLDLSHNRLTGPVPGSVITSMRNIQIYLNLSYNYLEGTIPDEIGKLEMIQAIDISNNNLSGRIPATLEGCRNLFDLDLSSNELSGQIPSQIFTGLDVLTSLNLSKNRLDGALPENLASLKNLSSLDLSQNKFTGVIPESFANISTLKCLNLSFNQLEGRVPESGVFRNINATSVAGNPSLCGARYLIACRSTSHRLNRLAKKTMWILVGLGSVFVFLLLLVAVPLLGRYLKKQKMKTVEVEEPDYSLALALKRFNQRDLENATNFFSEDNIIGTSSLSTVYKGRLEDGEMIAVKNLNLHQFSTESDKSFNREVKTLNKLRHRNLVKVLGYAWESKKLKALVLEYMENGNLESIIHDSAVDLSMWTLSKRIDVLVSIARGLVYLHSGYDLPIVHCDLKPSNILFDGKWDAHVSDFGTARMLGVHLQDGTKLSLSSGFEGTIGYLAPEFAYMRKVTTKVDVFSFGVVVMEFLTGRRPTGLEEENGLPITLPQLVQKSLENGISSVLQIIDPLLASNVSKNEGVVEDLLKLAFSCTCPVPEDRPDMDQVLSSLSKVSKIVSRLDHTHRMGSDQNSNSNANRYSAH

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13420	FLS2	MAPK signaling pathway - plant	map04016
K13420	FLS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.915
	SRR3591706	second leaf	1.322
	SRR3591707	mature leaf	0.524
	SRR3591708	Shoot apex	3.456
	SRR3591709	Stem	10.772
	SRR3591710	White floral bud	3.548
	SRR3591711	White flower	4.951
	SRR3591712	Green floral bud	2.453
	SRR3591713	Yellow flower	0.686
SRP173429	SRR8316895	Juvenile bud stage	4.842
	SRR8316896	Juvenile bud stage	5.154
	SRR8316897	Juvenile bud stage	2.735
	SRR8316894	Third green stage	2.487
	SRR8316900	Third green stage	3.485
	SRR8316901	Third green stage	3.673
	SRR8316898	Complete white stage	2.523
	SRR8316899	Complete white stage	6.360
	SRR8316903	Complete white stage	4.438
	SRR8316902	Silver flowering stage	2.830
	SRR8316904	Silver flowering stage	3.023
	SRR8316905	Silver flowering stage	0.746
	SRR8316906	Gold flowering stage	2.289
	SRR8316907	Gold flowering stage	4.148
	SRR8316908	Gold flowering stage	4.969
SRP132670	SRR6706286	Control	2.804
	SRR6706287	Light intensity 50%	3.430
	SRR6706288	Light intensity 20%	3.830
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.723
	CNS0095593	Slightly white alabastrum(diploid) 2	8.048
	CNS0095594	Slightly white alabastrum(diploid) 3	5.015
	CNS0095595	Whole white alabastrum(diploid) 2	4.497
	CNS0095596	Whole white alabastrum(diploid) 3	1.915
	CNS0095597	Whole white alabastrum(diploid) 4	4.178
	CNS0095598	Silvery flower (diploied) 1	14.676
	CNS0095599	Silvery flower (diploied) 2	4.729
	CNS0095600	Silvery flower (diploied) 3	5.730
	CNS0095601	Golden flower (diploid) 1	4.440
	CNS0095602	Golden flower (diploid) 2	5.855
	CNS0095603	Golden flower (diploid) 3	5.383
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.649
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.594
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.329
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.070
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.238
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.303
	CNS0095610	Silvery flower (diploied) 1	3.015
	CNS0095611	Silvery flower (diploied) 2	2.502
	CNS0095612	Silvery flower (diploied) 3	2.384
	CNS0095613	Golden flower (tetraploid) 1	1.033
	CNS0095614	Golden flower (tetraploid) 2	1.989
	CNS0095615	Golden flower (tetraploid) 3	0.704
CRA001975	CRR073297	Stem 1	8.025
	CRR073298	Stem 2	5.638
	CRR073299	Stem 3	2.300
	CRR073300	Leaf 1	5.874
	CRR073301	Leaf 2	7.035
	CRR073302	Leaf 3	4.293
	CRR073303	Juvenile bud 1	4.305
	CRR073304	Juvenile bud 2	2.005
	CRR073305	Juvenile bud 3	13.976
	CRR073306	Third green 1	0.805
	CRR073307	Third green 2	2.267
	CRR073308	Third green 3	3.347
	CRR073309	Second white 1	0.791
	CRR073310	Second white 2	0.305
	CRR073311	Second white 3	0.449
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	1.282
	CRR073314	Silver flowering 3	0.864
	CRR073315	Gold flowering 1	1.993
	CRR073316	Gold flowering 2	4.706
	CRR073317	Gold flowering 3	1.734
	CRR073318	Tawny withering 1	5.006
	CRR073319	Tawny withering 2	4.690
	CRR073320	Tawny withering 3	7.623