Gene detail

Detail information of GWHGAAZE009044

Functional Annotation

Database	Orthologs	Annotation
Nr	KCW87455.1	hypothetical protein EUGRSUZ_B03924 [Eucalyptus grandis]
Swissprot	tr\|Q9FYC2\|PAO_ARATH	Pheophorbide a oxygenase, chloroplastic (Precursor)
trEMBL	tr\|A0A059DB79\|A0A059DB79_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW87455.1}
TAIR10	AT3G44880.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	100531389	100537026	+
GWHAAZE00000002	mRNA	100531389	100537026	+
GWHAAZE00000002	exon	100531389	100531937	+
GWHAAZE00000002	exon	100532448	100532683	+
GWHAAZE00000002	exon	100533442	100533568	+
GWHAAZE00000002	exon	100534136	100534272	+
GWHAAZE00000002	exon	100534976	100535135	+
GWHAAZE00000002	exon	100535637	100535918	+
GWHAAZE00000002	exon	100536862	100537026	+
GWHAAZE00000002	five_prime_UTR	100531389	100531487	+
GWHAAZE00000002	CDS	100531488	100531937	+
GWHAAZE00000002	CDS	100532448	100532683	+
GWHAAZE00000002	CDS	100533442	100533568	+
GWHAAZE00000002	CDS	100534136	100534272	+
GWHAAZE00000002	CDS	100534976	100535135	+
GWHAAZE00000002	CDS	100535637	100535918	+
GWHAAZE00000002	CDS	100536862	100537026	+

Transcript Sequence
>GWHTAAZE009054 CTCTCTGCAACTCCATCTACACAATCAAACTTTCCTAAGAAAACACCACGATTTCCTTTTGACAAACCCAAATCATCCCCTCCAAAAATAAAATAAAAAATGCCCTCTTCCCTTCTTTCTACACCAATAATCCCAACACTCATTTCATCACTATCATCACCACCACCCACCAATCCCCTCCCACCTCCCTTTCTCTCCTCCAAAACCCTAATTCCTTCTCGCCGGCGACGACAAACATTTCTCTCTCCTCCTCTACGTGTATCCGCACCGCCATCTCCGGCCATCACAACCATTCCAATAGAAGATGATGAACGATTATCATCAAAAAATTCACAAGGAATCCAAGAGAATGAAGAGAACCAAGATTCTTCATCGAAATTCTCGTGGAGAGACCACTGGTACCCTGTCTCTCTCGTAGAGGACCTTGACCCTAGTATTGCCACTCCGTTCCAGCTCCTTAATAGAGATATTGTGCTCTGGTTTGATCGATCTGATTCCCAGTGGGTTGCCTTGGATGATAAATGCCCTCACCGTCTTGCTCCCTTATCTGAAGGACGAATTGATGAAAATGGGCACTTGCAGTGTTCATATCATGGATGGTCCTTTGATGGATGTGGGTCTTGTGTTAGGATACCTCAGGCATCGGCAGAGGGGCCGGAAGCACGAGCTTTCCAATCTTCGAGAGCGTGTGCTACGAGGTTTCCGACGATGGTGTCTCAGGGTTTGCTCTTCGTTTGGCCGGACGAGAATGGTTGGGAACGAGCTCAGGCCACCAGCCCTCCTATGTTGCCTGATGACTTCAGTAACCCTCAGTTTTCAACGGTGACGATTCAGCGGGATTTGTTCTATGGCTATGATACTCTCATGGAGAATGTCTCTGATCCTTCTCACATTGATTTTGCTCATCACAAGGTAACGGGGAGGAGGGATAGAGCCAAGGCCTTGCCATTTAAGATGGAGTCTTCTGGCCTATGGGGATTTTCTGGATCTAATGATGGAAATCCTAAAATCAGTGCTAAATTTGTTGCACCTTGTTATTATATTAATAAAGTAGAGATTGATACAAAGCTTCCCATTGTGGGGGATCAGAAATGGATAATATGGATATGTTCCTTCAATGTCCCAATGGCACCTGGAAAGACCCGTTCCATTGTTTGTAGTGCTCGAAACTTCTTCCAGTTCACAATGCCAGGGCCCGCTTGGTGGCAGGTGATCCCTCGATGGCATGAACATTGGACATCGAACAAAGTGTATGACGGGGACATGATTGTACTTCAAGGCCAAGAGAAAGTCTTCATTTCAAAGTCAATGGAGGGGGGTTCTGCTGATGTAAACAAGGAGTACACAACAATCACATTTACACCCACACAAGCCGATCGGTTCGTCTTGGCTTTCCGGAATTGGCTGAGGCGTCATGGCAACAGCCAGCCCGAGTGGTTCGGCACCACCAACACACTTTCATTGCCGTCTACTGTCTTATCCAAACGTCAGATGCTGGATAGATACGAGCAGCACACTCTGAAGTGTTCTTCGTGTAAGAAAGCTTATACGACTTTCCAAACGCTGCAAAAGTTCCTAATTGGCGTAGCAGTCGTTGGCTCTGCAGCAGCTGGGGTTCCTCCAGACATGCAATTGCGGGTTATTTTGGCGGACTAG

Network for GWHGAAZE009044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00355.27	Rieske	99	182	2.60E-19
PF08417.13	PaO	308	402	7.80E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13071	PAO, ACD1	Biosynthesis of secondary metabolites	map01110
K13071	PAO, ACD1	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0010277	molecular_function	chlorophyllide a oxygenase [overall] activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0051537	molecular_function	2 iron, 2 sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.983
	SRR3591706	second leaf	29.114
	SRR3591707	mature leaf	47.458
	SRR3591708	Shoot apex	18.881
	SRR3591709	Stem	42.025
	SRR3591710	White floral bud	91.641
	SRR3591711	White flower	179.518
	SRR3591712	Green floral bud	49.671
	SRR3591713	Yellow flower	206.119
SRP173429	SRR8316895	Juvenile bud stage	29.280
	SRR8316896	Juvenile bud stage	65.169
	SRR8316897	Juvenile bud stage	36.742
	SRR8316894	Third green stage	21.806
	SRR8316900	Third green stage	40.986
	SRR8316901	Third green stage	38.889
	SRR8316898	Complete white stage	34.868
	SRR8316899	Complete white stage	59.993
	SRR8316903	Complete white stage	73.682
	SRR8316902	Silver flowering stage	49.456
	SRR8316904	Silver flowering stage	74.715
	SRR8316905	Silver flowering stage	41.289
	SRR8316906	Gold flowering stage	120.770
	SRR8316907	Gold flowering stage	123.702
	SRR8316908	Gold flowering stage	107.600
SRP132670	SRR6706286	Control	52.966
	SRR6706287	Light intensity 50%	57.468
	SRR6706288	Light intensity 20%	58.650
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.269
	CNS0095593	Slightly white alabastrum(diploid) 2	16.542
	CNS0095594	Slightly white alabastrum(diploid) 3	20.852
	CNS0095595	Whole white alabastrum(diploid) 2	16.272
	CNS0095596	Whole white alabastrum(diploid) 3	15.772
	CNS0095597	Whole white alabastrum(diploid) 4	21.079
	CNS0095598	Silvery flower (diploied) 1	41.585
	CNS0095599	Silvery flower (diploied) 2	45.005
	CNS0095600	Silvery flower (diploied) 3	160.682
	CNS0095601	Golden flower (diploid) 1	42.204
	CNS0095602	Golden flower (diploid) 2	147.171
	CNS0095603	Golden flower (diploid) 3	142.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.542
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.687
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.179
	CNS0095610	Silvery flower (diploied) 1	169.960
	CNS0095611	Silvery flower (diploied) 2	181.442
	CNS0095612	Silvery flower (diploied) 3	222.081
	CNS0095613	Golden flower (tetraploid) 1	148.014
	CNS0095614	Golden flower (tetraploid) 2	156.815
	CNS0095615	Golden flower (tetraploid) 3	296.451
CRA001975	CRR073297	Stem 1	55.150
	CRR073298	Stem 2	61.577
	CRR073299	Stem 3	54.678
	CRR073300	Leaf 1	60.160
	CRR073301	Leaf 2	55.570
	CRR073302	Leaf 3	44.240
	CRR073303	Juvenile bud 1	55.961
	CRR073304	Juvenile bud 2	60.755
	CRR073305	Juvenile bud 3	69.291
	CRR073306	Third green 1	80.898
	CRR073307	Third green 2	54.251
	CRR073308	Third green 3	68.038
	CRR073309	Second white 1	83.238
	CRR073310	Second white 2	96.861
	CRR073311	Second white 3	101.023
	CRR073312	Silver flowering 1	118.463
	CRR073313	Silver flowering 2	112.369
	CRR073314	Silver flowering 3	126.290
	CRR073315	Gold flowering 1	42.290
	CRR073316	Gold flowering 2	73.209
	CRR073317	Gold flowering 3	44.173
	CRR073318	Tawny withering 1	29.624
	CRR073319	Tawny withering 2	29.240
	CRR073320	Tawny withering 3	28.007