Gene detail

Detail information of GWHGAAZE009095

Functional Annotation

Database	Orthologs	Annotation
Nr	AGE10590.1	phenylalanine amononia-lyase [Lonicera japonica]
Swissprot	tr\|P45726\|PALY_CAMSI	Phenylalanine ammonia-lyase
trEMBL	tr\|L7Z9I6\|L7Z9I6_LONJA	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}
TAIR10	AT2G37040.1	PHE ammonia lyase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	102171493	102179702	-
GWHAAZE00000002	mRNA	102171493	102179702	-
GWHAAZE00000002	exon	102179329	102179702	-
GWHAAZE00000002	exon	102171493	102173242	-
GWHAAZE00000002	CDS	102179329	102179702	-
GWHAAZE00000002	CDS	102171493	102173242	-

Transcript Sequence
>GWHTAAZE009105 ATGGAGAATGGCAATAGCAATGGCCACTGCCACGCGGGGTGGGACCCACTCAATTGGGGGGCTGCCGCGGAGGCGTGGAAGGGTAGTCACTTGGATGAGGTGAGGAGGATGGTGAGGGAGTACCGGAAGCCGGTGGTGGGTCTTGGAGGGGAGAGTTTGACTGTGGCTCAGGTGGCTGCGACGGCAGTGGGTGGCGGAGGAGTGGTGGTTGTGGAGCTGAGGGAGGAGGCTAGGGATGGTGTAAAGGCTAGTAGTGAGTGGGTGATGGAAAGTATGAATAAAGGGACAGATAGTTATGGGGTCACCACTGGATTTGGGGCCACTTCTCATAGGAGGACTAAACAAGGCAATGCTCTTCAAAAAGAGCTTATAAGGTTCTTGAATGCTGGAATATTTGGCAATGGAACAGAATCAACCCACACATTATCACAATCAGCAACAAGGGCTGCAATGCTAGTTAGAATCAACACGCTCCTCCAAGGCTACTCTGGCATTAGATTTGAGATACTTGAAGCCCTCACTAAGCTCCTCAACCACGACATCACCCCATGTCTCCCCTTACGCGGCACCATCACCGCCTCTGGCGACCTCGTCCCCCTCTCGTACATCGCCGGGATCCTCACCGGTCGCCCCAACTCCAAGTGTGTGGGTCCTTCCGGAAAGCCCCTTGGCCCCACCGAGGCCTTTCAGCTAGCCGGAATAAAAGGCGGGTTCTTTGAGTTACAACCCAAGGAGGGGCTCGCCCTTGTTAATGGCACGGCCGTGGGGTCAGGGCTTGCGTCTATTGTACTTTTTGAGGTCAATGTACTAGCAGTTTTATCTGAGGTACTTTCGGCTGTTTTTGCCGAGGTTATGCAAGGGAAACCAGAGTTTACGGACCATTTGACGCATAAGTTGAAGCACCACCCAGGGCAAATCGAGGCTGCAGCTGTAATGGAACACATTTTGGATGGTAGCTCTTATGTTAAAGAAGCGAAAAAGTTACATGAAATGGATCCGCTTCAAAAGCCTAAGCAAGATCGGTACGCTCTTCGTACCTCGCCACAGTGGCTTGGCCCGCAGATAGAGGTTATCCGATCATCGACAAAATCCATCGAACGAGAGATCAATTCAGTTAACGATAACCCTCTGATCGATGTGAAGAGGAACAAGGCCTTACATGGTGGGAATTTTCAAGGGACACCCATTGGTGTGTCTATGGATAACACTAGATTAGCTATAGCATCCATTGGGAAACTAATGTTTGCACAATTCTCAGAGCTAGTTAATGACTTTTACAACAATGGATTGCCTTCGAATCTCTCCGGGGGAAGAAACCCTAGCTTGGATTATGGGTTCAAAGGGGCCGAGGTAGCCATGGCATCGTATTGCTCGGAGCTACAATTTCTAGCCAATCCGGTCACTAACCACGTTCAAAGTGCCGAGCAACATAACCAAGATGTGAACTCTTTAGGGCTAATCTCATCGAGAAAAACTGCCGAGGCGGTTGACTTATTGAAGTTAATGTCATCAACATACTTAGTGGCACTTTGCCAAGCTATTGACTTGAGGCATTTAGAGGAGAACTTGAAGAACACGGTCAAGAACACAGTTAGCCAAGCCGCGAAGAAGGTCCTCATCATGGGCACCAACGGTGAACTTCGGCCCTCTAGATTTTGTGAAAAGGACTTGCTCAAAGTGGTCGATCGTGAGCATGTTTTTTCATACATTGATGATCCTTGTAGTGCAAGTTACCCACTAATGCAAAAGCTAAGGCAAGTTCTTGTTCAACACGCATTAGATAGTGATGAAGATTTGAAGATTTTGGGCAACTCGATCTTCTTGAAAATCGGGGCATTTGAGGATGAACTTAAGAACCTTTTGCCGAAAGAAGTGGAAAGTACAAGGAGCGCCTTTGAGAGTGAAAATTTAGCAATTCCAAATAGGATTAAAGAGTGTAGATCTTACCCACTATACAAGTTTGTGAGGGAAGAGTTGAAGGGCGAGTATTTGACAGGGGAGAAGATAAGATCACCAGGGGAGGTATTTGATAAGGTTTTTTCAGCAATTTGTGAAGGGAAAGTGATTGATCCTCTCCTTCAATGTCTAGAGGATTGGAATGGTGCCCCTCTTTCAATTTCTTAA

Network for GWHGAAZE009095

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00221.20	Lyase_aromatic	53	526	2.70E-152

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10775	PAL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylalanine metabolism	map00360
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006559	biological_process	L-phenylalanine catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0003824	molecular_function	catalytic activity
GO:0016841	molecular_function	ammonia-lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.494
	SRR3591706	second leaf	49.327
	SRR3591707	mature leaf	18.456
	SRR3591708	Shoot apex	84.726
	SRR3591709	Stem	11.638
	SRR3591710	White floral bud	25.322
	SRR3591711	White flower	11.612
	SRR3591712	Green floral bud	38.121
	SRR3591713	Yellow flower	1.360
SRP173429	SRR8316895	Juvenile bud stage	24.517
	SRR8316896	Juvenile bud stage	25.567
	SRR8316897	Juvenile bud stage	17.339
	SRR8316894	Third green stage	8.391
	SRR8316900	Third green stage	33.736
	SRR8316901	Third green stage	30.288
	SRR8316898	Complete white stage	3.326
	SRR8316899	Complete white stage	13.944
	SRR8316903	Complete white stage	7.823
	SRR8316902	Silver flowering stage	2.214
	SRR8316904	Silver flowering stage	3.451
	SRR8316905	Silver flowering stage	0.224
	SRR8316906	Gold flowering stage	0.669
	SRR8316907	Gold flowering stage	0.848
	SRR8316908	Gold flowering stage	2.171
SRP132670	SRR6706286	Control	39.855
	SRR6706287	Light intensity 50%	44.232
	SRR6706288	Light intensity 20%	44.622
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.312
	CNS0095593	Slightly white alabastrum(diploid) 2	19.546
	CNS0095594	Slightly white alabastrum(diploid) 3	22.439
	CNS0095595	Whole white alabastrum(diploid) 2	17.280
	CNS0095596	Whole white alabastrum(diploid) 3	8.050
	CNS0095597	Whole white alabastrum(diploid) 4	18.756
	CNS0095598	Silvery flower (diploied) 1	32.500
	CNS0095599	Silvery flower (diploied) 2	22.527
	CNS0095600	Silvery flower (diploied) 3	10.552
	CNS0095601	Golden flower (diploid) 1	15.416
	CNS0095602	Golden flower (diploid) 2	10.637
	CNS0095603	Golden flower (diploid) 3	10.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.120
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.728
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.812
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.293
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.530
	CNS0095610	Silvery flower (diploied) 1	25.020
	CNS0095611	Silvery flower (diploied) 2	16.125
	CNS0095612	Silvery flower (diploied) 3	7.910
	CNS0095613	Golden flower (tetraploid) 1	2.941
	CNS0095614	Golden flower (tetraploid) 2	7.310
	CNS0095615	Golden flower (tetraploid) 3	0.714
CRA001975	CRR073297	Stem 1	34.232
	CRR073298	Stem 2	35.402
	CRR073299	Stem 3	40.273
	CRR073300	Leaf 1	20.273
	CRR073301	Leaf 2	29.292
	CRR073302	Leaf 3	23.607
	CRR073303	Juvenile bud 1	10.844
	CRR073304	Juvenile bud 2	29.922
	CRR073305	Juvenile bud 3	14.917
	CRR073306	Third green 1	9.944
	CRR073307	Third green 2	6.752
	CRR073308	Third green 3	7.824
	CRR073309	Second white 1	5.500
	CRR073310	Second white 2	4.358
	CRR073311	Second white 3	2.635
	CRR073312	Silver flowering 1	2.947
	CRR073313	Silver flowering 2	4.172
	CRR073314	Silver flowering 3	2.538
	CRR073315	Gold flowering 1	7.842
	CRR073316	Gold flowering 2	8.191
	CRR073317	Gold flowering 3	10.840
	CRR073318	Tawny withering 1	9.212
	CRR073319	Tawny withering 2	5.834
	CRR073320	Tawny withering 3	10.404