Gene detail

Detail information of GWHGAAZE009104

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010264667.1	PREDICTED: auxin response factor 18-like [Nelumbo nucifera]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|A0A068UFQ3\|A0A068UFQ3_COFCA	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT2G28350.1	auxin response factor 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	102573000	102577390	+
GWHAAZE00000002	mRNA	102573000	102577390	+
GWHAAZE00000002	exon	102573000	102574088	+
GWHAAZE00000002	exon	102575265	102575760	+
GWHAAZE00000002	exon	102575850	102576072	+
GWHAAZE00000002	exon	102576828	102576893	+
GWHAAZE00000002	exon	102577306	102577390	+
GWHAAZE00000002	CDS	102573000	102574088	+
GWHAAZE00000002	CDS	102575265	102575760	+
GWHAAZE00000002	CDS	102575850	102576072	+
GWHAAZE00000002	CDS	102576828	102576893	+
GWHAAZE00000002	CDS	102577306	102577390	+

Transcript Sequence
>GWHTAAZE009114 ATGAAGGAGGTGGAAAAAAACTTGGATTCTCAATTATGGCATGCGTGTGCTGGAGGTATGGTTCAAATGCCTTCTGTGGGCTCAATAGTCTTCTATTTCCCTCAAGGGCATGCAGAACACGCCCTTGCAGATGTTGATTTTGGGGGATTGCCAAGGGTTCCAGCATTAATCCATTGTAGGGTTACTGCTGTAAAATTCATGGCAGATCCAGAAACTGATGAAGTGTATGCCAAGATTAGGTTGGTTCCTATTGGAAACCTTGAGCAAAATTATGATGATGATGGGTTTTTAGGGAGTAATGGGCCTGAATCCCCTGAAAAACCCACTTCTTTTGCAAAAACGTTGACTCAGTCCGATGCAAACAATGGTGGAGGTTTTTCGGTTCCTCGGTACTGTGCGGAAACGATTTTCCCTCGTTTGGATTACTCGGCTGACCCACCGGTGCAAACTGTCATTGCTAAAGATGTTCATGGTGAAGTTTGGAAGTTTAGGCATATTTATAGAGGGACACCTAGGAGGCATTTGTTGACAACTGGATGGAGTACTTTTGTGAACCAGAAGAAGCTGGTTGCAGGGGATTCGATTGTGTTCATGAGGGCTGAGAATGGAGATCTTTGTGTTGGAATTCGGCGGGCCAAGAGAGGGGGAATTGGTGGGCCCGAGTCTCCCTCCGGGTGGAGTTCAGCTGCTGGGAACTGCGTTTCTTCTTATGGGGGATTTGCAGTTTTCTTGAGGGAGGATGAGAACAGACTTCTGAGAGGTGGGAGTAACGGGACTTTGAATTCTGCTGGGGTTTTGAGGGGGAGGGGAAAAGTGAGCCCTGAATCCGTTCTTGAAGCTACTTCCCTTGCCGCCAACGGGCAGCCTTTTGAGGTTGTTTACTATCCTCGGGCAAACACTCCGGAGTTCTGTGTTAAGGCTTCTTCTTTTAGTGCTGCAATGAGGATTCAGTGGTGCTCTGGAATGAGGTTCAAAATGGCCTTTGAAACAGAGGATTCTTCCCGGATTAGCTGGTTCATGGGAACTGTAGCTTCTGCTCAAGTTGCTGATCCAATCCGCTGGCCCAATTCCCCGTGGCGGCTTCTCCATGTAGCATGGGACGAACCAGACCTACTACAAAATGTGAAGTGTGTTAGCCCATGGCTAGTAGAATTGGTGTCAAATATGCCCGCTATTCATCTCTCACCCTTTTCTCCACCAAGAAAGAAGTTTCGGTTACCATTACACCCCGACTTTCCACTTGACGGTCAATTCCCAATTCCGTCATTTTCAGGGAATCCCCTCGGGCCGGCCACCGGTCCCTTTCGCTGTCTACCCGACAACGTCCCTGCAGGCATACAGGGAGCCAGGCATACTCATTTTGGGGTACCCTTTTTGGATCTCCACCTCACCAATAAACTCCATCCGGGATTGGTCCCACCCAGTTTCCACTGCATTGATCAACGTGCTAAAATGCCAAATAGCAGCTTCATTCGTGGCCCTGCAAATGGCAACGATGACATTTCTTGCTTACTAACCATGGGTAATTCTAGTCATAAATTGGAGAAAACTGATAATGTGAAGGCCCCCCGATTCATACTCTTTGGATTTCGCCCGGCTGAACTTGGGCTCGATACTGGTCACTGTAAGGTATTTCTGCAGTCTGAGGATGTGGGCCGTAGTCTTGACCTTTCTGCTCTCGGGTCTTATGAAGAGCTATATAGAAGGCTCGCAAATATGTTTGGAATTGAAAGATCGAAGTTGCTTACTCGTGTACTCTACCGTGATGCTTCTGGTTCTGTTAAACAAACTGGTGATGAACCATTCAGTGAGTTTATGAAAACAGCAAAAAGGCTGACGATCTTAATGGATTCCACAAGTAACAATGTTGGAAGGAACTGGAGTATTACAGGTCTGCGGAATGCCGAACATGGTCTAGATTCTTCAAGCCAAACAGGGCCCTTGAGCATATTCGCTTAG

Network for GWHGAAZE009104

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	111	212	1.50E-22
PF06507.14	Auxin_resp	280	362	7.70E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.544
	SRR3591706	second leaf	13.257
	SRR3591707	mature leaf	14.795
	SRR3591708	Shoot apex	13.496
	SRR3591709	Stem	15.494
	SRR3591710	White floral bud	23.839
	SRR3591711	White flower	36.087
	SRR3591712	Green floral bud	18.433
	SRR3591713	Yellow flower	46.807
SRP173429	SRR8316895	Juvenile bud stage	13.561
	SRR8316896	Juvenile bud stage	20.764
	SRR8316897	Juvenile bud stage	6.307
	SRR8316894	Third green stage	7.213
	SRR8316900	Third green stage	17.015
	SRR8316901	Third green stage	19.515
	SRR8316898	Complete white stage	7.437
	SRR8316899	Complete white stage	22.498
	SRR8316903	Complete white stage	12.906
	SRR8316902	Silver flowering stage	11.649
	SRR8316904	Silver flowering stage	15.632
	SRR8316905	Silver flowering stage	9.164
	SRR8316906	Gold flowering stage	29.577
	SRR8316907	Gold flowering stage	27.345
	SRR8316908	Gold flowering stage	22.787
SRP132670	SRR6706286	Control	24.478
	SRR6706287	Light intensity 50%	23.745
	SRR6706288	Light intensity 20%	26.438
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.421
	CNS0095593	Slightly white alabastrum(diploid) 2	5.917
	CNS0095594	Slightly white alabastrum(diploid) 3	8.622
	CNS0095595	Whole white alabastrum(diploid) 2	4.864
	CNS0095596	Whole white alabastrum(diploid) 3	5.223
	CNS0095597	Whole white alabastrum(diploid) 4	5.146
	CNS0095598	Silvery flower (diploied) 1	13.073
	CNS0095599	Silvery flower (diploied) 2	9.325
	CNS0095600	Silvery flower (diploied) 3	32.749
	CNS0095601	Golden flower (diploid) 1	9.087
	CNS0095602	Golden flower (diploid) 2	29.803
	CNS0095603	Golden flower (diploid) 3	27.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.255
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.220
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.518
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.385
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.929
	CNS0095610	Silvery flower (diploied) 1	38.275
	CNS0095611	Silvery flower (diploied) 2	45.413
	CNS0095612	Silvery flower (diploied) 3	41.213
	CNS0095613	Golden flower (tetraploid) 1	25.754
	CNS0095614	Golden flower (tetraploid) 2	42.624
	CNS0095615	Golden flower (tetraploid) 3	43.221
CRA001975	CRR073297	Stem 1	29.633
	CRR073298	Stem 2	26.867
	CRR073299	Stem 3	25.423
	CRR073300	Leaf 1	34.332
	CRR073301	Leaf 2	28.617
	CRR073302	Leaf 3	22.841
	CRR073303	Juvenile bud 1	21.325
	CRR073304	Juvenile bud 2	23.021
	CRR073305	Juvenile bud 3	30.708
	CRR073306	Third green 1	14.032
	CRR073307	Third green 2	9.730
	CRR073308	Third green 3	13.775
	CRR073309	Second white 1	16.103
	CRR073310	Second white 2	21.845
	CRR073311	Second white 3	24.259
	CRR073312	Silver flowering 1	13.367
	CRR073313	Silver flowering 2	13.261
	CRR073314	Silver flowering 3	9.177
	CRR073315	Gold flowering 1	20.360
	CRR073316	Gold flowering 2	17.521
	CRR073317	Gold flowering 3	14.241
	CRR073318	Tawny withering 1	24.589
	CRR073319	Tawny withering 2	15.549
	CRR073320	Tawny withering 3	16.496