Gene detail

Detail information of GWHGAAZE009236

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010106460.1	Putative E3 ubiquitin-protein ligase XBAT31 [Morus notabilis]
Swissprot	tr\|Q94B55\|XB31_ARATH	Putative E3 ubiquitin-protein ligase XBAT31
trEMBL	tr\|W9SIN1\|W9SIN1_9ROSA	Putative E3 ubiquitin-protein ligase XBAT31 {ECO:0000313\|EMBL:EXC10636.1}
TAIR10	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	106106014	106109112	+
GWHAAZE00000002	mRNA	106106014	106109112	+
GWHAAZE00000002	exon	106106014	106106193	+
GWHAAZE00000002	exon	106106376	106106435	+
GWHAAZE00000002	exon	106106614	106106685	+
GWHAAZE00000002	exon	106106776	106106897	+
GWHAAZE00000002	exon	106107127	106107267	+
GWHAAZE00000002	exon	106107357	106107464	+
GWHAAZE00000002	exon	106107903	106108161	+
GWHAAZE00000002	exon	106108711	106109112	+
GWHAAZE00000002	CDS	106106014	106106193	+
GWHAAZE00000002	CDS	106106376	106106435	+
GWHAAZE00000002	CDS	106106614	106106685	+
GWHAAZE00000002	CDS	106106776	106106897	+
GWHAAZE00000002	CDS	106107127	106107267	+
GWHAAZE00000002	CDS	106107357	106107464	+
GWHAAZE00000002	CDS	106107903	106108161	+
GWHAAZE00000002	CDS	106108711	106109112	+

Transcript Sequence
>GWHTAAZE009246 ATGGGTCAGGGACTTAGCTGCGGAAATAGAGACGAGCATGGTCTCTTCACTGCAGTTCAGTTTGGTGATTTAGAAACTGTAGAGGCTCTTTTGGAGATAAACCCATCAATAATCCAACGCACCACAGTTTACGATCGCCACTCGGCTCTTCATATAGCCGCTGCCAATGGCCAGATCGAGATTGTTTCAATGCTTTTGGATCGAGCTGTTAATCCTGATTTGTTGAATCGTCATAAGCAGACTCCATTGATGTTGGCTTCAATGCACGGGAAGATCTCTTGTGTGCAAAAGCTCCTTCAAGCTGGGGCAAATATTTTGATGTTTGATTCAATTCATGCAAGAACTTGCTTGCACTATGCTGCTTACTATGCCCATTCTGATTGCCTCGAAGCAATTCTCTCAGCGGCCCGATCCTCCCATGTAGCTATTTCTTGGGGATACGCCCGGTTTGTGAATATTAGAGATGGTAAGGGAGCAACACCATTGCACTTGGCGGCCCGTCAAAGACGGCCTGAATGCGTGCATATACTTTTAGACAATGGAGCTCTTGTTTGTGCATCAACCGGTGGATATAGCTTCCCCGGTAGTACTCCACTACATTTGGCTGCAAGAGGGGGTTCTCTGGATTGCATCCGTGAATTGTTGGCTTGGGGTGCAGATCGGCTACAAAGAGATGCATCGGGGAGAATACCATACGCAGTGGCTCTGAAGCATAAGCATGGGGCATGTGCGGCGTTGCTGAATCCTTCATCTGCAGAGCCTCTTGTGTGGCCGTCACCATTGAAGTTCATTAGCGAGCTCAATCAAGAGGCAAAGGCTTTGTTAGAACAAGCCCTAATGGACGCAAATAAGGAGAGGGAGAAGAACATCTTGAAGGGCACCGCTTACTCGCTACCATCTCCATCACATTCTGATGCTGGGATTGATGACAACATGTCTGAGGGTAGTGACACAGAGCTATGTTGCATATGCTTTGATCAAATATGCACCATTGAAGTCCAAGATTGTGGCCACCAAATGTGTGCTCAATGCACATTGGCCTTATGCTGCCATAATAAGCCCAACCCTACAACTGCATGCCTCACCGCACCTGTCTGCCCATTTTGTCGAAGCAACATTGCCCAATTGGTTGTTGCAAAGGTCAAAACCGAGCAAGATTTGGACAAAGACCTCTACTTGTCAAAGCTAAGGACATCAAGAAGATCCAAGAATTTCAGTGAGGGCAGTAGCAGTTTTAAGGGCTTATCTGCAATGAGTTCTTTCGGCAAGATGGGGGGGCGAAGCTCTGGGAGGGTATCTACCGAAAACGAGTGGATCGAGAAACCTGAATTCTTGCAAAATTAG

Network for GWHGAAZE009236

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	15	109	9.20E-15
PF12796.8	Ank_2	114	183	5.30E-09
PF13857.7	Ank_5	195	235	2.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	106.305
	SRR3591706	second leaf	16.804
	SRR3591707	mature leaf	12.060
	SRR3591708	Shoot apex	70.107
	SRR3591709	Stem	65.628
	SRR3591710	White floral bud	24.967
	SRR3591711	White flower	24.597
	SRR3591712	Green floral bud	38.947
	SRR3591713	Yellow flower	18.869
SRP173429	SRR8316895	Juvenile bud stage	27.106
	SRR8316896	Juvenile bud stage	29.488
	SRR8316897	Juvenile bud stage	13.864
	SRR8316894	Third green stage	15.041
	SRR8316900	Third green stage	44.196
	SRR8316901	Third green stage	41.237
	SRR8316898	Complete white stage	19.253
	SRR8316899	Complete white stage	79.190
	SRR8316903	Complete white stage	22.305
	SRR8316902	Silver flowering stage	15.419
	SRR8316904	Silver flowering stage	18.018
	SRR8316905	Silver flowering stage	9.693
	SRR8316906	Gold flowering stage	28.193
	SRR8316907	Gold flowering stage	36.300
	SRR8316908	Gold flowering stage	35.235
SRP132670	SRR6706286	Control	40.754
	SRR6706287	Light intensity 50%	44.918
	SRR6706288	Light intensity 20%	47.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.059
	CNS0095593	Slightly white alabastrum(diploid) 2	43.125
	CNS0095594	Slightly white alabastrum(diploid) 3	26.324
	CNS0095595	Whole white alabastrum(diploid) 2	31.626
	CNS0095596	Whole white alabastrum(diploid) 3	27.709
	CNS0095597	Whole white alabastrum(diploid) 4	29.602
	CNS0095598	Silvery flower (diploied) 1	32.799
	CNS0095599	Silvery flower (diploied) 2	31.518
	CNS0095600	Silvery flower (diploied) 3	37.735
	CNS0095601	Golden flower (diploid) 1	27.628
	CNS0095602	Golden flower (diploid) 2	37.256
	CNS0095603	Golden flower (diploid) 3	35.772
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.722
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.426
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.940
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.601
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.607
	CNS0095610	Silvery flower (diploied) 1	31.970
	CNS0095611	Silvery flower (diploied) 2	43.463
	CNS0095612	Silvery flower (diploied) 3	33.682
	CNS0095613	Golden flower (tetraploid) 1	24.237
	CNS0095614	Golden flower (tetraploid) 2	35.297
	CNS0095615	Golden flower (tetraploid) 3	17.010
CRA001975	CRR073297	Stem 1	75.928
	CRR073298	Stem 2	71.218
	CRR073299	Stem 3	71.035
	CRR073300	Leaf 1	79.555
	CRR073301	Leaf 2	70.386
	CRR073302	Leaf 3	84.946
	CRR073303	Juvenile bud 1	83.534
	CRR073304	Juvenile bud 2	50.107
	CRR073305	Juvenile bud 3	100.642
	CRR073306	Third green 1	30.612
	CRR073307	Third green 2	30.205
	CRR073308	Third green 3	31.529
	CRR073309	Second white 1	34.590
	CRR073310	Second white 2	21.301
	CRR073311	Second white 3	18.841
	CRR073312	Silver flowering 1	14.513
	CRR073313	Silver flowering 2	14.754
	CRR073314	Silver flowering 3	15.207
	CRR073315	Gold flowering 1	17.087
	CRR073316	Gold flowering 2	20.648
	CRR073317	Gold flowering 3	22.159
	CRR073318	Tawny withering 1	78.609
	CRR073319	Tawny withering 2	49.260
	CRR073320	Tawny withering 3	79.304