Gene detail

Detail information of GWHGAAZE009267

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010262557.1	2.298E-141	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]
Swissprot	tr\|P0CH30\|RING1_GOSHI	5E-33	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|A0A068TV43\|A0A068TV43_COFCA	1E-130	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00121.1}
TAIR10	AT5G59550.1	2E-66	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	106761961	106763064	-
GWHAAZE00000002	mRNA	106761961	106763064	-
GWHAAZE00000002	exon	106761961	106763064	-
GWHAAZE00000002	CDS	106761961	106763064	-

Transcript Sequence
>GWHTAAZE009277 ATGTCGACGAATACGGCGTCGTATTGGTGTTACAGGTGTTCTGGCTTCGTTAGGGTTTTATCGGAGGATAACGTTGCTTGTCCTCACTGCGATGGTGGATTCGTTGAAGCGGTGGACCCTATGTCCCCGCCGGAATCGGGCCGGCGATTCACTCACCGGTCAGATTTGGATAGGACCTCGAGTAATTATAATAATAATAGGTTTCGTCGAGGTCGGCGGCAGAACGGTGACCGGTCACCGTTCAATCCGGTCATCGTTTTGCGTGGTCCGGTTGAGGGAGATGATGGTGCTGGAAGAGAGAGGAGTTTTGAATTGTATTACGACGACGGTGTAGGTTCTGGTCTCCAACCGTTACCGGAGATGATGTCGGAGTTTTTGATGGGGTCGGGGTTTGATAGGTTGCTTGATCAGTTATCGCAGATCGAAACGAACGGTGTTGTCCGGTCGGATCAACCTCCCGCATCGAAAGCAGCGGTTGAATCGATGCCGACTGTCGTTATTTTAGAAGAACATGTCAGCACAGAATCACACTGTGCTGTGTGTAAAGAAGCTTTTGCTCTCGGATCCGAAGCTAGAGAAATGCCTTGTAATCATATCTATCATTCGGATTGTATTTTGCCTTGGCTTAATTTACGTAATTCGTGTCCTGTTTGTAGGCACGAATTGCCGACTTGTAATTTTGTGGAATCGAATTATCAAGAGCAATCTGAATCTGAATCTCAAGATGATTCTGTTGGGCTTACTATATGGAGATTGCCCGGGGGTGGATTTGCAGTGGGGAGATTCAGTGGGGGAACAACAAGAATAGGTGAGAGAGAGCTGCCTGTCGTGTTTACTGAAATGGATGGTGGATTCAACAATGGTGGTGCTCCTAGGATGATTACGTGGGCATCAAGAAGAAGTAGAGTTAGAGGAGGTGGGTTTGCGAGGGCTTTTCGCAATCTCTTCTCGTTTTTTGGGAGATCCAGGTCACCATCATCTTCGTCATCATCGACATTGACTTCATATTCGAGTAGTTCAGAATCTCGGTTATCGATGAATAGAAGTGGGAGGCAGTTGAGTTCAGTGTTCACTAGGTTTCTGAGGAGGGGCAGCAGAGCATAG

Network for GWHGAAZE009267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.7	zinc_ribbon_9	7	36	3.80E-12
PF13639.7	zf-RING_2	177	219	2.40E-10
PF06547.13	DUF1117	245	352	6.40E-38

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0061630	molecular_function	ubiquitin protein ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	110.486
	SRR3591706	second leaf	29.181
	SRR3591707	mature leaf	18.782
	SRR3591708	Shoot apex	59.422
	SRR3591709	Stem	145.630
	SRR3591710	White floral bud	63.847
	SRR3591711	White flower	111.737
	SRR3591712	Green floral bud	42.129
	SRR3591713	Yellow flower	59.927
SRP173429	SRR8316895	Juvenile bud stage	144.435
	SRR8316896	Juvenile bud stage	108.922
	SRR8316897	Juvenile bud stage	99.590
	SRR8316894	Third green stage	45.323
	SRR8316900	Third green stage	64.204
	SRR8316901	Third green stage	112.644
	SRR8316898	Complete white stage	4.838
	SRR8316899	Complete white stage	158.076
	SRR8316903	Complete white stage	7.173
	SRR8316902	Silver flowering stage	12.338
	SRR8316904	Silver flowering stage	9.007
	SRR8316905	Silver flowering stage	14.586
	SRR8316906	Gold flowering stage	71.558
	SRR8316907	Gold flowering stage	46.118
	SRR8316908	Gold flowering stage	33.198
SRP132670	SRR6706286	Control	12.131
	SRR6706287	Light intensity 50%	13.953
	SRR6706288	Light intensity 20%	12.933
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.822
	CNS0095593	Slightly white alabastrum(diploid) 2	79.388
	CNS0095594	Slightly white alabastrum(diploid) 3	63.257
	CNS0095595	Whole white alabastrum(diploid) 2	53.594
	CNS0095596	Whole white alabastrum(diploid) 3	11.190
	CNS0095597	Whole white alabastrum(diploid) 4	43.993
	CNS0095598	Silvery flower (diploied) 1	195.945
	CNS0095599	Silvery flower (diploied) 2	191.876
	CNS0095600	Silvery flower (diploied) 3	73.806
	CNS0095601	Golden flower (diploid) 1	124.544
	CNS0095602	Golden flower (diploid) 2	81.927
	CNS0095603	Golden flower (diploid) 3	80.084
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.324
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.099
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.286
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.022
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.843
	CNS0095610	Silvery flower (diploied) 1	11.673
	CNS0095611	Silvery flower (diploied) 2	6.564
	CNS0095612	Silvery flower (diploied) 3	42.242
	CNS0095613	Golden flower (tetraploid) 1	10.175
	CNS0095614	Golden flower (tetraploid) 2	9.092
	CNS0095615	Golden flower (tetraploid) 3	7.084
CRA001975	CRR073297	Stem 1	71.724
	CRR073298	Stem 2	125.711
	CRR073299	Stem 3	120.891
	CRR073300	Leaf 1	253.137
	CRR073301	Leaf 2	297.859
	CRR073302	Leaf 3	208.878
	CRR073303	Juvenile bud 1	168.834
	CRR073304	Juvenile bud 2	213.626
	CRR073305	Juvenile bud 3	407.424
	CRR073306	Third green 1	90.988
	CRR073307	Third green 2	65.599
	CRR073308	Third green 3	75.777
	CRR073309	Second white 1	189.390
	CRR073310	Second white 2	114.045
	CRR073311	Second white 3	119.657
	CRR073312	Silver flowering 1	226.500
	CRR073313	Silver flowering 2	220.238
	CRR073314	Silver flowering 3	123.446
	CRR073315	Gold flowering 1	99.640
	CRR073316	Gold flowering 2	89.672
	CRR073317	Gold flowering 3	129.839
	CRR073318	Tawny withering 1	38.610
	CRR073319	Tawny withering 2	106.849
	CRR073320	Tawny withering 3	64.186